Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5 241 1e-57 seq7 149 5e-30 seq13 118 9e-21 >seq5 Length=1427117 Score = 241 bits (266), Expect = 1e-57 Identities = 556/829 (67%), Gaps = 29/829 (3%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGA 551848 ||||||| | || | || || ||||||||||| || ||| |||| | |||||||| Sbjct 586588 TGGAGATACCCACTTGGGAGGAGAAGATTTTGACAACAGATTGGTCAACTTTTGTGTTGA 586529 Query 551849 AGATTTTAAACGAAAAAACAAAG---TTGATCTATCTACATCTGCCAAAGCTCTTCGTCG 551905 ||||||||| ||||||| | || ||| |||||| | | || ||| | | | Sbjct 586528 AGATTTTAAGAGAAAAAATAGAGGCAAAGATTTATCTAAAAATAGCAGAGCGTTGAGAAG 586469 Query 551906 TCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTAT 551965 |||||||| || || |||||||| || || | || ||| || ||| |||| || Sbjct 586468 GCTAAGAACCCAATGTGAGAGAGCCAAGCGTACTTTGTCCTCTTCCACCCAAGCCACCAT 586409 Query 551966 TGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATT 552025 ||| | ||||| | ||||| || ||||| || | | | | | || |||| ||| Sbjct 586408 CGAAATTGATTCCCTTTTTGAAGGTATTGACTACAGTGTGACGGTGAGCAGAGCCAGATT 586349 Query 552026 TGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAG 552085 ||| || | ||| ||| ||| ||| | ||| | || || || ||||||| | Sbjct 586348 TGAGGAGCTATGTATTGACTACTTCAGAGACACACTCATTCCTGTGGAGAAAGTTTTGAA 586289 Query 552086 AGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAG 552145 |||| | | ||| ||||| | || || ||| |||| ||||| ||||| || || || Sbjct 586288 AGATGCCATGATGGATAAGAAGAGCGTGCACGAAGTTGTCCTTGTAGGTGGTTCCACGAG 586229 Query 552146 AATTCCTAAAATTCGCGAAATG----TTAAGTTCTTATTTCAATGGTAAAAAATTAAATG 552201 |||||| ||||||| ||| | ||||| || ||||||||| || || || Sbjct 586228 AATTCCAAAAATTC---AAACGCTCATTAAGGAGTT-TTTCAATGGAAAGGAA--GCCTG 586175 Query 552202 AAAGT--GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | || |||| || ||||| || || || |||||||| ||| | |||||||| ||| | Sbjct 586174 CAGGTCGATTAACCCTGATGAAGCCGTCGCGTATGGTGCAGCAGTGCAAGCAGCCATTTT 586115 Query 552260 TTCTGGACAAACTGATGA----AAAAC--TACAAAATATTGTACTTGTAGATGT-TACTC 552312 ||||| |||| | || | | || || | | || ||||||| | || Sbjct 586114 GTCTGG------TGATCAGTCCAATGCCGTGCAGGATTTACTCCTCTTAGATGTGTGCT- 586062 Query 552313 CTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATA 552372 ||||||| || ||||| ||||| | |||||| ||||||| || || || || ||||| | Sbjct 586061 CTCTATCCCTCGGTTTGGAAACCGCAGGAGGTGTTATGACCAAGCTGATTGAGAGAAACA 586002 Query 552373 CTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTG 552432 | || || || || || | | ||| | || ||| | ||||| ||| | | || Sbjct 586001 CCACCATCCCAGCGAAGAAGAGCCAAATCTTTACCACCTATGCTGATAACCAACCAGGTG 585942 Query 552433 TTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTA 552492 | ||| ||| | | |||||||| ||| | || || || || || | | |||| Sbjct 585941 TCTTAATCCAAGTGTACGAAGGAGAGAGAGCCCTAACAAAGGACAACAACCTGTTGGGTA 585882 Query 552493 CTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTT 552552 ||| | |||| ||||| || ||||||||| | |||||| ||||||||||| || | Sbjct 585881 AATTTCACCTAGACGGTATCCCCCCTGCTCCTAGGAAAGTACCCCAAATTGAAGTCACCT 585822 Query 552553 TCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 | ||||| ||||||||||| || | || || || ||| ||| ||||| Sbjct 585821 TTGATATTGATGCCAATGGTATCCTTAACGTCACCGCTGTTGAGAAATC 585773 >seq7 Length=1562840 Score = 149 bits (164), Expect = 5e-30 Identities = 359/542 (66%), Gaps = 11/542 (2%) Strand=Plus/Plus Query 552013 CGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAG 552072 |||| |||||||||||||| | | ||| | |||||| |||| | ||||| ||| Sbjct 723316 CGAGAGCCAAATTTGAAGAATTAAATGATGACTTATTTAGAGAAACTTTAGAACCCGTA- 723374 Query 552073 AACAAGTTTTAAGA-GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTT 552131 || ||| | ||| || |||| ||| || |||| | |||| ||||| || || Sbjct 723375 AAGAAGGTACTAGATGACGCAAAATATGAGAAGAGCAAAATTGATGAGATTGTTCTCGTA 723434 Query 552132 GGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAA 552191 || |||||||| | || || ||||||| |||| ||| | || ||||| || Sbjct 723435 GGAGGATCTACTCGTATCCCAAAAATTCAACAAATTATAAAAGAATTCTTTAATGGAAAG 723494 Query 552192 AAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCA 552251 || |||| | || | || |||||||| ||||| || || ||||| || || ||||| Sbjct 723495 GAACCAAATAGAGGTATAAACCCAGATGAAGCTGTAGCATACGGTGCTGCCATCCAAGCT 723554 Query 552252 GCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACT 552311 | || ||| ||| ||| || ||||| || | || || ||||||| ||| Sbjct 723555 GGAATCATTTTGGGA---------GAAGAATTACAAGATGTCGTTCTACTAGATGTGACT 723605 Query 552312 CCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAAT 552371 || || | | || ||||||| ||||||||||| ||||| | ||||| | ||||| Sbjct 723606 CCACTCACGTTAGGAATAGAAACCGTTGGAGGTATCATGACGCAACTTATTAAAAGAAAC 723665 Query 552372 ACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCT 552431 || || || || || |||| ||||| || || |||||| ||| | ||| Sbjct 723666 ACAGTCATCCCAACGAAGAAGTCTCAGACCTTTTCCACCTACCAAGATAACCAACCAGCT 723725 Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491 || |||||| | || |||||||||||| ||| || || |||||| | | | || Sbjct 723726 GTCCTCATTCAAGTGTTCGAAGGAGAAAGAGCATTAACAAAGGATAATCACCTTTTGGGA 723785 Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551 | ||| | | ||| || || || || | | |||||||| |||| ||||| || Sbjct 723786 AAATTTGAACTCACAGGAATCCCACCAGCACAGAGAGGAGTACCCAAAATAGAAGTCACC 723845 Query 552552 TT 552553 || Sbjct 723846 TT 723847 Score = 134 bits (148), Expect = 1e-25 Identities = 364/548 (66%), Gaps = 12/548 (2%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || || ||||| || ||||| || || ||||| |||| ||||||| | ||| Sbjct 722448 ATCGGAATCGACTTAGGCACAACATACAGCTGCGTTGGAGTTTTCAAAAATGGCAGAGTG 722507 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||| | ||| || | || ||| | | || || || ||||| || ||| ||| Sbjct 722508 GAAATTTTGAACAACGAGCTGGGAAACCGTATCACCCCCTCGTATGTATCCTTCGTGGAT 722567 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||| || ||||| ||||| |||| ||||||| | || || | || Sbjct 722568 GGAGAAAGGAAGGTGGGTGAGGCAGCCAAATTGGAAGCCACCCTACACCCCACGCAGACA 722627 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCG--ACTGTTCAGGCAG 550232 | || |||| ||||| || || ||||||| ||| | || | | || | || || Sbjct 722628 GTATTCGATGTGAAACGATTGATAGGAAGAAAATTTGACGACCAGGAAGTGGTGAG--AG 722685 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTA 550292 ||| || | || ||| | | ||||||| || ||||| || |||| || || Sbjct 722686 ATAGGACCCTTTTGCCATACGAAATTGTGAACCAAGAAGGAAAGCCAAATATAAGAG-TA 722744 Query 550293 CTCATGAAGGATCTGTTAAACAA--TTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | || ||||| | | || | ||| | ||||||||||| | ||||||||| Sbjct 722745 CAGATCAAGGACAAGA-AGACGACGTTTGCCCCAGAACAAATCAGTGCCATGGTTTTAGA 722803 Query 550351 GAAAATGAAACAAACAGC-CAGTGCTTTTGTTGGTCAAG-AAGTTACGGATGCAGTAATA 550408 |||||||||| ||| ||| || | |||| |||| ||| ||||| | | ||||| || Sbjct 722804 GAAAATGAAAGAAATAGCTCAATCCTTT--TTGGGAAAGCCAGTTAAGAACGCAGTGGTA 722861 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| ||||| ||||| ||||| | || | ||||| || |||||||| ||| ||| Sbjct 722862 ACTGTGCCAGCGTATTTCAATGATGCGCAGAGACAAGCAACAAAAGATGCAGGAACGATT 722921 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | || | | |||||||| || || || || || || || | || || || Sbjct 722922 GCTGGGTTGAACATCGTGCGTATTATAAACGAGCCAACCGCAGCAGCTTTGGCGTACGGT 722981 Query 550529 CTTGATAA 550536 | ||||| Sbjct 722982 TTGGATAA 722989 >seq13 Length=2073822 Score = 118 bits (130), Expect = 9e-21 Identities = 138/184 (75%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || |||||||| | ||||||||| |||||| | ||||||||| |||||||| ||||| Sbjct 509765 ATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTC 509706 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||||||||| ||||| || || || || |||||||| ||| || || || ||| Sbjct 509705 TGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTA 509646 Query 563413 TCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | || |||| || ||||| | || || || || || || || || |||||||| Sbjct 509645 TCGGATGATTCTACA-TCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTG 509587 Query 563472 CATA 563475 |||| Sbjct 509586 CATA 509583 Score = 113 bits (124), Expect = 4e-19 Identities = 137/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || |||||||| | ||||||||| ||||| | ||||||||| |||||||| ||||| Sbjct 509537 ATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTC 509478 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||||||||| ||||| || || || || |||||||| ||| || || || ||| Sbjct 509477 TGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTA 509418 Query 563413 TCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | || |||| || ||||| | || || || || || || || || |||||||| Sbjct 509417 TCGGATGATTCTACA-TCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTG 509359 Query 563472 CATA 563475 |||| Sbjct 509358 CATA 509355 Score = 111 bits (122), Expect = 1e-18 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| ||||| | || | ||| ||| || || ||||| || | ||| ||| Sbjct 510032 CTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTT 509973 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 ||| ||||| | |||||| |||||||| || ||||| |||||||| || |||||||| Sbjct 509972 CTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCC 509913 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAG 563432 |||||||| || ||||| ||| || ||||| || || | ||| | || || || Sbjct 509912 TCTTTATCCTGTATTTTGGCTTTCACATTTTCAATCGTGTCGGA-TGACTCCACATCAAG 509854 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | || || || ||||| || || || |||||||||||| Sbjct 509853 GGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCATA 509811 Score = 104 bits (114), Expect = 2e-16 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || |||||||| | ||||||||| ||||| | |||||| |||||||| |||||||| Sbjct 509309 ATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATAAGTCTC 509250 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| || || |||||||| ||||| || || ||||| || || ||||| || Sbjct 509249 TGCTGGTCGGGGGGAATTCCCTCTTTGTCCTGTATTTTGGCCTTCACATTTTCAATCGTG 509190 Query 563413 TCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | ||| | || || || || | || || || ||||| || || || |||||||| Sbjct 509189 TCGGA-TGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTG 509131 Query 563472 CATA 563475 |||| Sbjct 509130 CATA 509127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029276221193260