Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq13 104 2e-17 >seq13 Length=2073822 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| ||||| ||||| ||| || || || || |||||||| || ||| ||| || Sbjct 509570 CGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCG 509511 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| || || || ||||| || |||| ||| ||||| | ||||| |||||||||| Sbjct 509510 TCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTG 509451 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||| || ||| ||| | | || || || | || || || | || || Sbjct 509450 TCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATG 509391 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || | || || |||||||| ||||| Sbjct 509390 GTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509356 Score = 102 bits (112), Expect = 6e-17 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| ||||| ||||| ||| || || || || |||||||| || ||| ||| || Sbjct 509342 CGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCG 509283 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| || || ||||||||||| |||| ||| || || | ||||| ||||| ||| Sbjct 509282 TCTTCCAATTGTTTGCCGGCAAATATAAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTG 509223 Query 48672 TCGCTAATCTTTTG--TTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAA 48729 || || | ||||| || ||| | | | || || | |||||| || | || | Sbjct 509222 TC-CT-GTATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGA 509165 Query 48730 TCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || |||||||| | || || |||||||| ||||| Sbjct 509164 TGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 509128 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || | ||||| ||||| ||| || || || || |||||||| || Sbjct 509810 CCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAG 509751 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || ||||| || || || ||||| || |||| ||| ||||| | |||| Sbjct 509750 AGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGA 509691 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||| || ||| ||| | | || || || | || || Sbjct 509690 ATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACA 509631 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| || | || || |||||||| ||||| Sbjct 509630 TCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509584 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || ||||| ||| |||| ||||| || || ||||||||| Sbjct 510002 TCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAAT 509943 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTG--TTTTACAG 48693 || |||| ||| ||||| | ||||| ||||| || || || | ||||| ||| ||| Sbjct 509942 ATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATC-CT-GTATTTTGGCTTTCACAT 509885 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | || || | |||||| || | || || || |||||||| | || || | Sbjct 509884 TTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCA 509825 Query 48754 CAAAAATCTGCAT 48766 ||||||| ||||| Sbjct 509824 CAAAAATTTGCAT 509812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935863638802