Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5 237 1e-56 seq9 131 1e-24 >seq5 Length=1427117 Score = 237 bits (262), Expect = 1e-56 Identities = 620/934 (66%), Gaps = 25/934 (3%) Strand=Plus/Minus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 |||||||| ||||| || | || |||||||||||| | || | || || |||||| Sbjct 586620 GAAGATGGCATTTTCGAGGTGAAGGCCACAGCTGGAGATACCCACTTGGGAGGAGAAGAT 586561 Query 475400 TTTGATAATAGACTTGTATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTT--- 475456 ||||| || ||| | || | |||||||||||||| ||||| ||||||| || Sbjct 586560 TTTGACAACAGATTGGTCAACTTTTGTGTTGAAGATTTTAAGAGAAAAAATAGAGGCAAA 586501 Query 475457 GATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAG 475516 ||| | || | | | | ||| || ||| | || ||||| ||||| | || ||| Sbjct 586500 GATTTATCTAAAAATAGCAGAGCGTTGAGAAGGCTAAGAACCCAATGTGAGAGAGCCAAG 586441 Query 475517 CGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATT 475576 || || | || ||| | || ||| | || | ||| ||||||| ||||||||||| ||| Sbjct 586440 CGTACTTTGTCCTCTTCCACCCAAGCCACCATCGAAATTGATTCCCTTTTTGAAGGTATT 586381 Query 475577 GATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGA 475636 || || | | | | || || | |||||| || | ||| ||| ||| ||| Sbjct 586380 GACTACAGTGTGACGGTGAGCAGAGCCAGATTTGAGGAGCTATGTATTGACTACTTCAGA 586321 Query 475637 AAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAG-- 475694 | ||| | || || || ||||| | | |||| | | ||| || | ||| Sbjct 586320 GACACACTCATTCCTGTGGAGAAAGTTTTGAAAGATGCCA----TGATGGATAAGAAGAG 586265 Query 475695 --TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCT 475752 | || ||| |||| |||||||| ||||| || |||||||||||||| ||| ||| Sbjct 586264 CGTGCACGAAGTTGTCCTTGTAGGTGGTTCCACGAGAATTCCAAAAATTC---AAACGCT 586208 Query 475753 --TTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTA--AATCCTGATGAAGCT 475807 || | | |||| ||||| ||| | || | || | || ||||||||||| Sbjct 586207 CATTAAGGAGTTTTTCAATGG--AAAGGAAGCCTGCAGGTCGATTAACCCTGATGAAGCC 586150 Query 475808 GTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAAC-T 475866 || || ||||| || || || |||||||| ||||| || ||| | |||| | | | | Sbjct 586149 GTCGCGTATGGTGCAGCAGTGCAAGCAGCCATTTTGTCTGGTGA-TCAGTCCAATGCCGT 586091 Query 475867 AAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGG 475926 | || | | || | || || | || || | ||| | ||||| | ||||| Sbjct 586090 GCAGGATTTACTCCTCTTAGATGTGTGCTCTCTATCCCTCGGTTTGGAAACCGCAGGAGG 586031 Query 475927 GATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAA-ATCAAAAGTAT 475985 ||||||| || || ||||| ||||| || | |||||| || || | | ||| | | Sbjct 586030 TGTTATGACCAAGCTGATTGAGAGAAACACCACCATCCCAGCGAAGAAGAGCCAAA-TCT 585972 Query 475986 TTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAA 476045 || |||| ||| ||||||| ||| || ||| |||||| | | ||||| || ||| Sbjct 585971 TTACCACCTATGCTGATAACCAACCAGGTGTCTTAATCCAAGTGTACGAAGGAGAGAGAG 585912 Query 476046 AATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTC 476105 | || || || || ||| | || | ||| | || || ||||| || ||||||| Sbjct 585911 CCCTAACAAAGGACAACAACCTGTTGGGTAAATTTCACCTAGACGGTATCCCCCCTGCTC 585852 Query 476106 CCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATG 476165 | || ||| || ||||||||||| || |||||||||||||| |||||||| ||||| | Sbjct 585851 CTAGGAAAGTACCCCAAATTGAAGTCACCTTTGATATTGATGCCAATGGTATCCTTAACG 585792 Query 476166 TTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAATCGTG 476225 | || ||| ||| ||||| | | ||| || |||| || ||||| || | | Sbjct 585791 TCACCGCTGTTGAGAAATCCACTGGAAAGCAGAATCATATTACCATTACGAATGACAAGG 585732 Query 476226 GTAGATTTACTGAAGAACAAATTCAACGTATGGT 476259 | ||||| | |||| |||| | |||||||| Sbjct 585731 GAAGATTGTCCCCAGAAGAAATCGACCGTATGGT 585698 Score = 136 bits (150), Expect = 3e-26 Identities = 365/555 (66%), Gaps = 5/555 (1%) Strand=Plus/Minus Query 474326 ATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGT 474385 || ||||| || ||||| | ||||| || ||| || || | || ||| ||| | Sbjct 587247 ATCGCAATCGGCATTGACCTCGGAACCACCTACTCCTGCGTCGGCGTATGGAGAAACGAA 587188 Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 || ||||| || |||||||| ||||| || || ||||| || ||||| ||||| | || Sbjct 587187 AATGTAGATATCATTGCCAACGACCAGGGAAACAGAACCACCCCATCGTATGTGGCCTTC 587128 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 || || || || || || ||||||||||| || | |||| || || || | Sbjct 587127 ACGGACACGGAGAGACTAATAGGAGATGCTGCGAAGAACCAAGTGGCGAGGAACCCAGAG 587068 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || | || ||||| || || || || || | || || || | | || ||| Sbjct 587067 AACACCGTCTTCGATGCGAAGAGGTTAATCGGAAGGAAGTTCACCGAGTCGTCCGTGCAA 587008 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAA---TGTTGGTGGTAAACCATATATA 474622 |||||| || ||||| |||| || | | ||||| || || || || Sbjct 587007 AGCGATATGAAGCACTGGCCCTTTACCGTCAAATCCGGTGTTGATGAGAAGCCCATGATT 586948 Query 474623 GAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 || | | || ||| || | ||| ||| || || |||| || || |||||| Sbjct 586947 GAGGTGAGCTACCAAGGGGAGAAGAAATTATTCCACCCAGAGGAAATCTCCTCCATGGTT 586888 Query 474683 TTAGCCAAA-ATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 || || ||| |||||| ||| || | | | | ||| | | | ||||||| Sbjct 586887 TT-GCAAAAGATGAAAGAAAATGCAGAAGCGTTTTTGGGAAAGTCCATCAAAAATGCAGT 586829 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || || ||||| |||||||||||||| ||| | ||||| || || || || || | Sbjct 586828 GATCACCGTGCCAGCCTATTTTAATGATTCCCAAAGACAAGCCACGAAGGACGCAGGTAC 586769 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 ||||| ||| | ||||| | | |||||||| || ||||| ||||| || |||| || Sbjct 586768 CATTGCCGGTTTGAATGTCATGAGAATTATTAACGAGCCAACCGCAGCTGCTATTGCGTA 586709 Query 474862 TGGTCTTGATAAGAA 474876 ||||||| |||| || Sbjct 586708 TGGTCTTCATAAAAA 586694 >seq9 Length=2135711 Score = 131 bits (144), Expect = 1e-24 Identities = 134/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 290828 CCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCA 290887 ||| ||| ||| | ||||| ||||| || || ||||||| | ||||| | ||||||| Sbjct 1425219 CCAAATGCTAAGGCCGCTGCGGTTGGCTCGTTAATAATTCGAAGGACATCCAAACCTGCA 1425160 Query 290888 ATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTA 290947 |||||| | | |||| || || || | ||||| ||||||||| |||||||| ||||| Sbjct 1425159 ATTTTTCCTGCATCTTTGGTAGCTTGCCTTTGCGAATCATTAAAGTAAGCAGGCACTGTG 1425100 Query 290948 ATAACAGCtttttccactttctttttcaaataattttctgccatttgttttattt 291002 |||||||||| | |||||| || |||||| ||||| ||| ||| ||| |||| Sbjct 1425099 ATAACAGCTTGGTGTACTTTCCTTCCCAAATAGTTTTCAGCCGTTTCTTTCATTT 1425045 Score = 96.9 bits (106), Expect = 2e-14 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 ||||| | ||||||||| |||| || || | ||| | ||| ||||| | || Sbjct 1425035 GTTTTGGAAAAAATGAAAGAAACGGCTGAAAAC-TATTTGGGAAGGAAAGTACACCAAGC 1425093 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || || || || || || || ||||||||||| ||| | ||||| || |||||||| || Sbjct 1425094 TGTTATCACAGTGCCTGCTTACTTTAATGATTCGCAAAGGCAAGCTACCAAAGATGCAGG 1425153 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 || |||||||||| | |||| | || |||||||| || ||||| ||||| || | || Sbjct 1425154 AAAAATTGCAGGTTTGGATGTCCTTCGAATTATTAACGAGCCAACCGCAGCGGCCTTAGC 1425213 Query 474859 TTATGGTCTTGATAAGA 474875 | ||| | || |||| Sbjct 1425214 ATTTGGGTTAGAAAAGA 1425230 Score = 87.8 bits (96), Expect = 1e-11 Identities = 186/278 (67%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 475886 GACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATT 475945 || || | ||| || || ||||| | ||||| | || || || | || || | || Sbjct 1425842 GATGTGATTCCCCTATCTCTAGGTATAGAAACCCTAGGTGGAGTTTTCACCAAATTGATC 1425901 Query 475946 GACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAAT 476005 ||||||| || | ||||| || || || | | |||||||| |||| || Sbjct 1425902 AACAGAAACACGACCATCCCGACGAAGAAGTCGCAGATCTTTTCCACCGCAGCTGACAAC 1425961 Query 476006 CAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAAC 476065 |||||| || | |||| || | || |||| |||||| || | | |||||||| Sbjct 1425962 CAAACACAGGTGAGCATCAAAGTGTTCCAAGGAGAAAGAGAAATGGCATGCGATAATAAA 1426021 Query 476066 AAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATT 476125 | | ||| | || || | | || ||||| ||||| || |||||||| ||||||||| Sbjct 1426022 ATGTTAGGATCGTTCGATTTAGTGGGAATTCCCCCTGCACCTAGAGGAGTCCCTCAAATT 1426081 Query 476126 GAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAA 476163 ||||| || || ||| | || ||||| | ||| |||| Sbjct 1426082 GAAGTCACCTTCGATGTGGACGCAAACGCGATTATTAA 1426119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268163157325352