Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq13 165 1e-35 seq11 102 1e-16 >seq13 Length=2073822 Score = 165 bits (182), Expect = 1e-35 Identities = 181/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 193120 AAGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAA 193179 ||| || ||| | ||||||||||| || ||||| | || || |||| || || | Sbjct 510052 AAGGAAATTAAAAACCACCTCTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTA 509993 Query 193180 TATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCT 193239 | || |||||||||| ||||| || || |||||||| |||||||| || | ||||| Sbjct 509992 TGTTGTAGTCGGATAGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCT 509933 Query 193240 GTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTAT 193299 | ||||| || || ||||| |||||||| |||||||||| ||| | |||| ||| || | Sbjct 509932 GCTGATCGGGGGGAATTCCCTCTTTATCCTGTATTTTGGCTTTCACATTTTCAATCGTGT 509873 Query 193300 CGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 |||| ||||| || || || || || || || || || ||||| || ||||| ||||||| Sbjct 509872 CGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCA 509813 Query 193360 T 193360 | Sbjct 509812 T 509812 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| || || || |||| || | || | || || || || Sbjct 509820 AATTTGCATACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTT 509761 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| | ||||| ||| || ||||||||||| |||||||| | |||||| || Sbjct 509760 GTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTG 509701 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || || || || || || ||||||| ||| | |||| ||||||||||| Sbjct 509700 ATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGA 509641 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || ||||||||||| || ||||| |||||||| Sbjct 509640 TGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509584 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||| || || | |||| || | || | || || || || Sbjct 509592 AATTTGCATACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTT 509533 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | ||||| || || ||||||||||| |||||||| | |||||| || Sbjct 509532 GTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTG 509473 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || || || || || || ||||||| ||| | |||| ||||||||||| Sbjct 509472 ATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGA 509413 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || ||||||||||| || ||||| |||||||| Sbjct 509412 TGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509356 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| || || || |||| || | || | || || || || Sbjct 509136 AATTTGCATACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTT 509077 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| | ||||| ||| || ||||||||||| |||||||| | |||||| || Sbjct 509076 GTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTG 509017 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || ||||| ||||| || |||||||| | |||| ||| ||| || || || Sbjct 509016 GTCGGGGGGAATTCCCTCTTTGTCCTGTATTTTCGACTTTACATTCTCAATTGTGTCCGA 508957 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTG 193335 ||||| || || | || || ||||| |||| Sbjct 508956 TGACTCGACGTCCAAGGTGATGGTTTTTCCTG 508925 >seq11 Length=2126511 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || ||||| | | | |||| ||||| || ||||| || |||||||| || Sbjct 229914 ATCCTCCAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTT 229855 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| ||||| | ||| | || ||| || ||||| | ||| || || || || || Sbjct 229854 ATCTTCAATTTTTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGAT 229795 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || |||| |||||||| ||||||||||| Sbjct 229794 GGTTTTTCCGGTTAATGTTTTTACGAATATTTGCAT 229759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899650194115680