Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq13 138 2e-27 seq11 100 6e-16 >seq13 Length=2073822 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||||||||| ||||||| |||||| |||||||||| || || || || || || Sbjct 510042 AAAACCACCTCTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTC 509983 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||| |||| | | || ||||||||||| || ||||| || | |||||| ||||| || Sbjct 509982 GGATAGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGG 509923 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || ||||| |||||||| |||||||| ||| ||||| || | || || || || Sbjct 509922 GGGAATTCCCTCTTTATCCTGTATTTTGGCTTTCACATTTTCAATCGTGTCGGATGACTC 509863 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || | || || | ||| || ||||| Sbjct 509862 CACATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 509812 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | ||||| || || |||| || | || || ||| || ||||| Sbjct 509813 ATACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCG 509754 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| ||||||||||| || ||||| || | |||||| |||||||| Sbjct 509753 GAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGG 509694 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || ||||| ||| ||||| |||| ||| || |||||| Sbjct 509693 GGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCT 509634 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || |||| || || | ||| || ||||| Sbjct 509633 ACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509584 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | ||| || || || |||| || | || || ||| || ||||| Sbjct 509585 ATACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCC 509526 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | | || ||||||||||| || ||||| || | |||||| |||||||| Sbjct 509525 GAGAGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGG 509466 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || ||||| ||| ||||| |||| ||| || |||||| Sbjct 509465 GGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCT 509406 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || |||| || || | ||| || ||||| Sbjct 509405 ACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509356 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | ||||| || || |||| || | || || ||| || ||||| Sbjct 509129 ATACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCG 509070 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| ||||||||||| || ||||| || | |||||| || || || Sbjct 509069 GAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGGTCGGGG 509010 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || |||||||| |||||||| || | || || || || Sbjct 509009 GGAATTCCCTCTTTGTCCTGTATTTTCGACTTTACATTCTCAATTGTGTCCGATGACTCG 508950 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || | || |||||||| || Sbjct 508949 ACGTCCAAGGTGATGGTTTTTCC 508927 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | ||| || || || |||| || | || || ||| || ||||| Sbjct 509357 ATACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCC 509298 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | | || ||||||||||| || ||||| || | |||||| || || || Sbjct 509297 GAGAGAGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATAAGTCTCTGCTGGTCGGGG 509238 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || |||||||| || ||||| || | || || || || Sbjct 509237 GGAATTCCCTCTTTGTCCTGTATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCC 509178 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || | || || | ||| || ||||| Sbjct 509177 ACATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 509128 >seq11 Length=2126511 Score = 100 bits (110), Expect = 6e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| ||||| || || || | | | |||| ||||| || |||||||| |||||||| | Sbjct 229915 CATCCTCCAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCT 229856 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||||| ||||| ||| || || | || | || || | || || || || || | Sbjct 229855 TATCTTCAATTTTTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGA 229796 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||||| || ||||||||||| | ||||| |||||||| Sbjct 229795 TGGTTTTTCCGGTTAATGTTTTTACGAATATTTGCATTTT 229756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984475282494900