Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13 113 4e-20 >seq13 Length=2073822 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||||| || || || || || || || || || || | || Sbjct 509128 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 509187 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || || || |||||||| ||||| || ||||| || Sbjct 509188 GACACGATTGAAAATGTGAAGGCCAAAATACAGGACAAAGAGGGAATTCCCCCCGACCAG 509247 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || |||||||| ||||| |||| || |||| | || ||||| ||| Sbjct 509248 CAGAGACTTATATTTGCCGGCAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 509307 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || ||||||||||| ||||| || || || || Sbjct 509308 ATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGG 509354 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || |||||||| || || || || || || || |||||| | || Sbjct 509356 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 509415 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || || ||||| || || || || || ||||| Sbjct 509416 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 509475 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || ||||| |||| || |||| | || ||||| ||| Sbjct 509476 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 509535 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || ||||||||||| ||||| || || || || Sbjct 509536 ATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGG 509582 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || |||||||| || || || || || || || |||||| | || Sbjct 509584 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 509643 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || || ||||| || || || || || ||||| Sbjct 509644 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 509703 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || ||||| |||| ||| |||| | || ||||| ||| Sbjct 509704 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 509763 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || |||||||| || ||||||||||| Sbjct 509764 ATCCAGAAGGAATCCACCCTACACTTGGT 509792 Score = 89.7 bits (98), Expect = 5e-13 Identities = 190/283 (67%), Gaps = 3/283 (1%) Strand=Plus/Minus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 |||||| || ||||| | |||||||||||||||||||| |||||||| |||| || | Sbjct 560427 GTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGA 560368 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTC 138659 || ||||||||| || | | ||| ||||||| |||||||| ||| ||| | | Sbjct 560367 TGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGC 560308 Query 138660 CTTGAGCGACGACCAGTCCCACAAATCGCTAGGT---TTTTTGTTCCACATATCGTACTG 138716 ||| || ||||||||| | | || | || |||||||| || |||| Sbjct 560307 CTTCAGTTCATCCCAGTCCCAATACTTCTTATCTACCTTAACATTCCACATGTCAAACTG 560248 Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGC 138776 | ||||| || || ||||| || | ||| | || ||| ||| || || || Sbjct 560247 AAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGCTGGGC 560188 Query 138777 CAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCG 138819 || ||| || | || | ||||||||| || || || ||| Sbjct 560187 CAGCTCCATGGACATTTCCAACGCACCATAATACATGGTCTCG 560145 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || ||||| || || | || || || | | |||||| | || | ||||| || Sbjct 508927 GGAAAAACCATCACCTTGGACGTCGAGTCATCGGACACAATTGAGAATGTAAAGTCGAAA 508986 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || || |||||||| ||||| || ||||| || || | | || ||||| || ||||| Sbjct 508987 ATACAGGACAAAGAGGGAATTCCCCCCGACCAGCAGAGACTCATTTTTGCGGGAAAACAA 509046 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 |||| ||| |||| | || ||||| ||||| || |||||||| || ||||||||| Sbjct 509047 TTGGAAGATGGAAGAACTCTCTCCGATTACAACATCCAGAAGGAATCCACCCTACACTTG 509106 Query 24911 GT 24912 || Sbjct 509107 GT 509108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895496728720