Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq13 114 1e-20 >seq13 Length=2073822 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||||| ||||| || || |||||||| || || ||||| ||||||| | || | Sbjct 509345 AAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTT 509286 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 || || | ||||||||| ||| |||| | ||| ||||| || || ||||| |||||| Sbjct 509285 CCGTCTTCCAATTGTTTGCCGGCAAATATAAGTCTCTGCTGGTCGGGGGGAATTCCCTCT 509226 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||| |||| ||| || ||| |||| | ||||| || || || ||||| || Sbjct 509225 TTGTCCTGTATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTG 509166 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || | || || ||||| || ||||| Sbjct 509165 ATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 509128 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| || ||||| || || |||||||| || || ||||| ||||| | Sbjct 509126 CCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAG 509067 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | |||||| || ||| | || | ||| ||||| || || ||| Sbjct 509066 AGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGGTCGGGGGGA 509007 Query 29680 ATACCCTCTTTGTCTTGTAATTT 29702 || ||||||||||| |||| ||| Sbjct 509006 ATTCCCTCTTTGTCCTGTATTTT 508984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217444122734