Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5 374 6e-98 seq7 194 1e-43 seq9 104 2e-16 >seq5 Length=1427117 Score = 374 bits (414), Expect = 6e-98 Identities = 1027/1549 (66%), Gaps = 46/1549 (3%) Strand=Plus/Plus Query 281363 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 281422 || |||||||| | ||| ||||| ||||||| || || || ||||| ||| Sbjct 585722 GACAATCTTCCCTTGTCATTCGTAATGGTAATATGATTCTGCTTTCCAGTGGATTTCTCA 585781 Query 281423 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 281482 | || || || ||||| |||||||||||||| | |||||| |||||||||||||| || Sbjct 585782 ACAGCGGTGACGTTAAGGATACCATTGGCATCAATATCAAAGGTGACTTCAATTTGGGGT 585841 Query 281483 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 281542 || || ||||||| ||||| || || | | |||| | |||| || || || Sbjct 585842 ACTTTCCTAGGAGCAGGGGGGATACCGTCTAGGTGAAATTTACCCAACAGGTTGTTGTCC 585901 Query 281543 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 281602 || || | || || || ||| | | |||||| || | | ||| ||||| | | Sbjct 585902 TTTGTTAGGGCTCTCTCTCCTTCGTACACTTGGATTAAGACACCTGGTTGGTTATCAGCA 585961 Query 281603 TAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATT 281661 || || ||||| | | ||| | || | | || || || |||||||| ||||| | || Sbjct 585962 TAGGTGGTAAAGATT-TGGCTCTTCTTCGCTGGGATGGTGGTGTTTCTCTCAATCAGCTT 586020 Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721 |||||||| ||| || || ||||| ||||| || || |||| ||||| | |||| Sbjct 586021 GGTCATAACACCTCCTGCGGTTTCCAAACCGAGGGATAGAGAGCACACATCTAAGAGGAG 586080 Query 281722 AATATTTTGAA-GTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCA 281779 | || || | | || | | | |||| |||| ||| |||||||| | || ||| Sbjct 586081 TAAATCCTGCACGGCATTGGACTGATC-ACCAGACAA-AATGGCTGCTTGCACTGCTGCA 586138 Query 281780 CCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT--TTACCATTGAAAA 281837 ||||| || || ||||||||||| |||| | | | || || || |||||||||| Sbjct 586139 CCATACGCGACGGCTTCATCAGGGTTAATCGA--CCTGCAGGCTTCCTTTCCATTGAAAA 586196 Query 281838 AATTTGAAAGAAG---TTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 | | || || ||| || || ||||| | | || || || || | |||| Sbjct 586197 ACTCCTTAATGAGCGTTTGAATT---TTTGGAATTCTCGTGGAACCACCTACAAGGACAA 586253 Query 281895 TTTCATGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 ||| ||||| || | || ||||| | | ||| |||||||| || || || Sbjct 586254 CTTCGTGCACGCTCTTCTT-ATCCATCATGGCATCTTTCAAAACTTTCTCCACAGGAATG 586312 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || |||| || |||| ||| || || || ||| | ||||| | | || ||| Sbjct 586313 AGTGTGTCTCTGAAGTAGTCAATACATAGCTCCTCAAATCTGGCTCTGCTCACCGTCACA 586372 Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 | || ||||| ||||| || | ||||||| ||| || || | ||| || ||||| || Sbjct 586373 CTGTAGTCAATACCTTCAAAAAGGGAATCAATTTCGATGGTGGCTTGGGTGGAAGAGGAC 586432 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT-- 282131 | | ||| || || | |||||| || ||||| |||| || ||| | ||| || Sbjct 586433 AAAGTACGCTTGGCTCTCTCACATTGGGTTCTTAGCCTTCTCAACGCTCT-GCTATTTTT 586491 Query 282132 -GATTCAAATCTGT---TTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 282187 ||| |||||| | | ||| ||||||||| |||||||||||||| | | || | Sbjct 586492 AGAT--AAATCTTTGCCTCTATTTTTTCTCTTAAAATCTTCAACACAAAAGTTGACCAAT 586549 Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 | || ||||||||||| |||||||| | |||| ||| | || || | || | |||| Sbjct 586550 CTGTTGTCAAAATCTTCTCCTCCCAAGTGGGTATCTCCAGCTGTGGCCTTCACCTCGAAA 586609 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | |||||||||| | | || | ||||| |||||| || || | || ||||| Sbjct 586610 ATGCCATCTTCAATCGTGAGGAGGGATACATCGAAGGTTCCTCCTCCGAGGTCGAAAATG 586669 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 || | ||| ||||| | | ||||||| |||||||||||||| |||||| || ||| Sbjct 586670 AGAATGTTCTTTTCTCCCTTTCCCTTTTTATGAAGACCATACGCAATAGCAGCTGCGGTT 586729 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || ||||||||||||| ||||| | ||| ||||| | ||||| || || |||||| Sbjct 586730 GGCTCGTTAATAATTCTCATGACATTCAAACCGGCAATGGTACCTGCGTCCTTCGTGGCT 586789 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTTT 282486 |||||||| ||||| |||||||| || || || || || || |||| | | | |||| Sbjct 586790 TGTCTTTGGGAATCATTAAAATAGGCTGGCACGGTGATCACTGCATTTTTGATGGACTTT 586849 Query 282487 TCCAATATAAGCGCT--TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 282544 |||| || |||| ||| ||| |||||| || |||| ||| || || |||| Sbjct 586850 CCCAA---AAACGCTTCTGCATTTTCTTTCATCTTTTGCAAAACCATGGAGGAGATTTCC 586906 Query 282545 TCTGG--AGAAT-ATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA 282601 ||||| |||| ||| ||| || ||| || || |||| || || | | Sbjct 586907 TCTGGGTGGAATAATTTCTT---CTCCCCTTGGTAGCTCACCTCAATCATGGGCTTCTCA 586963 Query 282602 CCAAC-----ATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGT 282656 |||| ||| | || |||| ||||| | |||||||| ||| || | Sbjct 586964 TCAACACCGGATT--TGACGGTAAAGGGCCAGTGCTTCATATCGCTTTGCACGGACGACT 587021 Query 282657 CATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG 282716 | | || | || || ||||| | || ||||| || | || || ||| || | Sbjct 587022 CGGTGAACTTCCTTCCGATTAACCTCTTCGCATCGAAGACGGTGTTCTCTGGGTTCCTCG 587081 Query 282717 CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATG 282776 | |||| | || || |||||||| || || || || || || || | ||||| | Sbjct 587082 CCACTTGGTTCTTCGCAGCATCTCCTATTAGTCTCTCCGTGTCCGTGAAGGCCACATACG 587141 Query 282777 ATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATA 282836 |||| || || | || || || || || ||||| || || || || | ||| ||||| Sbjct 587142 ATGGGGTGGTTCTGTTTCCCTGGTCGTTGGCAATGATATCTACATTTTCGTTTCTCCATA 587201 Query 282837 CACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAATTTT 282885 | || || || | || ||||| | ||||| || || || || || Sbjct 587202 CGCCGACGCAGGAGTAGGTGGTTCCGAGGTCAATGCCGATTGCGATGTT 587250 >seq7 Length=1562840 Score = 194 bits (214), Expect = 1e-43 Identities = 469/703 (67%), Gaps = 13/703 (2%) Strand=Plus/Minus Query 281303 TTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCA 281362 || ||||| | ||| |||||| || || || |||||||| |||| ||||| || | Sbjct 724006 TTCTTATCCTCATCTGCAAATTTTTCTGCATCGTTAATCATTTTCTCGATTTGTTCCTTG 723947 Query 281363 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 281422 |||| |||||| || || ||||| |||||| ||| || |||| ||| || Sbjct 723946 GAGAGTCTTCCCTTATCGTTCGTAATGGTAATACCTTTGCTCTTTCCTGTTCCTTTGTCT 723887 Query 281423 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 281482 | || || | ||||| ||||| ||||| | ||| |||||||| |||| || Sbjct 723886 TCCGCTTCTACGTGGAGAATGCCATTCTTATCCACAGTAAAGGTGACTTCTATTTTGGGT 723827 Query 281483 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 281542 || |||||||| || |||||||| ||| | | |||| |||||| | | |||||| Sbjct 723826 ACTCCTCTCTGTGCTGGTGGGATTCCTGTGAGTTCAAATTTTCCCAAAAGGTGATTATCC 723767 Query 281543 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 281602 || || ||| || ||| || ||||| | ||| || || | | ||| |||||| Sbjct 723766 TTTGTTAATGCTCTTTCTCCTTCGAACACTTGAATGAGGACAGCTGGTTGGTTATCTTGG 723707 Query 281603 TAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATT 281661 || || | ||| |||| || || || || || ||||||||| | ||||| | Sbjct 723706 TAGGTGGAAAAGG-TCTGAGACTTCTTCGTTGGGATGACTGTGTTTCTTTTAATAAGTTG 723648 Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721 ||||| ||||| ||| | ||||||| || | | || ||||| ||||| | ||| || Sbjct 723647 CGTCATGATACCTCCAACGGTTTCTATTCCTAACGTGAGTGGAGTCACATCTAGTAGAAC 723588 Query 281722 AATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781 | || ||| | || ||| || |||| | || | | ||||| || |||||||| Sbjct 723587 GACATCTTGTAATTCTTC-TC-------CCAAAATGATTC-CAGCTTGGATGGCAGCACC 723537 Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 281841 ||||| ||||||||||| || || | | | |||| ||| || ||||| || || | Sbjct 723536 GTATGCTACAGCTTCATCTGGGTTTATACCTCTATTTGGTTCCTTTCCATTAAAGAATTC 723477 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 | | || |||| | || || ||||||| |||||||| || | ||||| |||| Sbjct 723476 TTTTATAATTTGTTGAATTTTTGGGATACGAGTAGATCCTCCTACGAGAACAATCTCAT- 723418 Query 281902 CACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAG 281960 || | || | || || ||||| || || || || | |||||||| | | Sbjct 723417 CAATTTTGCTCTTCTCATATTTTGCGTCATCTAGTACCTTCTTTACGGGTTCTAAAGTTT 723358 Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT 282003 ||||||| ||||| | | |||||| ||||| ||||| || Sbjct 723357 CTCTAAATAAGTCATCATTTAATTCTTCAAATTTGGCTCTCGT 723315 Score = 105 bits (116), Expect = 5e-17 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 |||| || ||||| | ||| ||||| ||||| || || ||||| || || ||||| | | Sbjct 722998 TCTTCCTTCTTATCCAAACCGTACGCCAAAGCTGCTGCGGTTGGCTCGTTTATAATACGC 722939 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | | || | |||||||| ||||||||||||| || |||||||| || | ||| || Sbjct 722938 ACGATGTTCAACCCAGCAATCGTTCCTGCATCTTTTGTTGCTTGTCTCTGCGCATCATTG 722879 Query 282446 AAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--G 282503 ||||| || || ||||| | || || | | ||| ||||| | | ||| | || | Sbjct 722878 AAATACGCTGGCACAGTTACCACTGCGTTCTTAACTGGCTTTCCCA-AAAAG-GATTGAG 722821 Query 282504 CTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 282549 || ||| ||||||||| ||||| ||| | ||||||||||| Sbjct 722820 CTATTTCTTTCATTTTCTCTAAAACCATGGCACTGATTTGTTCTGG 722775 >seq9 Length=2135711 Score = 104 bits (114), Expect = 2e-16 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||| | || || || || || ||||| || |||||||||| | |||| | ||| ||| Sbjct 1425219 CCAAATGCTAAGGCCGCTGCGGTTGGCTCGTTAATAATTCGAAGGACATCCAAACCTGCA 1425160 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| ||||||||||||| || ||||| ||||| ||||| ||||| || ||||| || || Sbjct 1425159 ATTTTTCCTGCATCTTTGGTAGCTTGCCTTTGCGAATCATTAAAGTAAGCAGGCACTGTG 1425100 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT---GCTGTTTGTTTCATTTTA 282520 ||||| || | ||||| |||| | ||| | || || |||| ||||||||| Sbjct 1425099 ATAACAGCTTGGTGTACTTTCCTTCCCAAATA---GTTTTCAGCCGTTTCTTTCATTTTT 1425043 Query 282521 CTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562 |||| || | ||||| ||| ||||||| |||| Sbjct 1425042 TCCAAAACGCATGCTCCTATTTGACTTGGGGAATATTTCTTG 1425001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740612038180524