Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq13 158 1e-33 seq11 104 2e-17 >seq13 Length=2073822 Score = 158 bits (174), Expect = 1e-33 Identities = 622/968 (64%), Gaps = 19/968 (2%) Strand=Plus/Minus Query 148061 CTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTC 148120 |||||| ||||| ||||| ||||| || ||||| || |||| ||| ||| ||||| Sbjct 560664 CTGGTCGATGAAGGCGCCCCGGTCGGCCGCCATATCGATGATGTTCTTCTGCTTGATCTC 560605 Query 148121 CCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGA 148180 |||| | ||||| || ||| ||| | | ||||||| || ||| || || Sbjct 560604 CCAGACGGTCTTATAGAGCTCCTTCAAGTCGGCGGGAATTTCGCTAATGTATTGGACACT 560545 Query 148181 GCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAG 148240 ||| |||||| | | ||| | ||| || || | ||| | | |||| || Sbjct 560544 CCCGTTGTGCGCGATGAGCTGCTGCTTCATGTCCTCATCCCAGAGGCCGCGGTCGAAGAG 560485 Query 148241 GTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCC-GCAGAT 148299 ||| | | ||| | | |||||||| ||||| || ||| || |||| | || | Sbjct 560484 GTCCTTCAGCAGGTGGGGGTTCACCACGAAGAACTCTCCACTGAGGACCCGCCTGTAG-T 560426 Query 148300 ACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTG 148359 | | || || || |||| |||||||| |||||||| |||| ||| || | || | || Sbjct 560425 AAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGATG 560366 Query 148360 CCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCT 148419 | || |||||| || | || || || || | ||||||| | || || ||||| || Sbjct 560365 CAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGCCT 560306 Query 148420 TCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTC---ACGTTCCACATGTCGTACTGCA 148476 |||| | |||||||||| | | | | || ||||||||||| |||| | Sbjct 560305 TCAGTTCATCCCAGTCCCAATACTTCTTATCTACCTTAACATTCCACATGTCAAACTGAA 560246 Query 148477 GAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCA 148536 | || || ||||||| || || |||| ||| | || ||||| | | | |||| Sbjct 560245 GGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGCTGGGCCA 560186 Query 148537 GTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA 148596 | || | | || | ||| || || || || |||||| |||| |||| ||| Sbjct 560185 GCTCCATGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGTTTAGCT 560126 Query 148597 GCGCCGCCGACTCGCTTTCGTACGGCATACG-CAGCCGCACAAACGCGTCGGCAAGGCCC 148655 || || || |||||| || |||| ||| ||| || | ||| || || ||| Sbjct 560125 CTTTAGCAGAATCAGATTCGTAGGG-ATACCTCAGAAGCATGAAGGTGTCTGCCAGCCCC 560067 Query 148656 TGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGA 148715 || || || | ||| ||||| | |||| | ||||||| | || ||| | || Sbjct 560066 TGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCCACGGGG 560007 Query 148716 TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGC 148775 |||| || | || || || | ||| | |||||| | | || |||||| | Sbjct 560006 TAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATTTCGTAG 559947 Query 148776 AGC------AATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAG 148829 ||| || | ||| || ||| || | ||| | || | || ||||| ||| Sbjct 559946 AGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCGCGATGGAG 559887 Query 148830 GCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGA 148889 || | |||||||||||| || || || | | | ||||||| ||| ||| ||| || Sbjct 559886 GCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAGCAGAGG 559827 Query 148890 TTGCTGCATTTGATCACGCCCACGTTCTTTTGATT-GCTCTTGCTGTTGCACGCGTCCTT 148948 ||||| ||||| || ||||| || || ||||| | | | || || || | ||| || Sbjct 559826 TTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCA-TTACAGGAGTCTTT 559768 Query 148949 GTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGG 149006 |||||||||||| || | || ||||| | ||| | | || ||| || | || ||| Sbjct 559767 GTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCAT--AGG 559710 Query 149007 TCCTGCGC 149014 |||||||| Sbjct 559709 TCCTGCGC 559702 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || |||| |||||| || ||||| || |||||||| | || ||| || | Sbjct 509333 AAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAAT 509274 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| || | || || | |||||||||||| || || || || ||||| || | Sbjct 509273 TGTTTGCCGGCAAATATAAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTC-CTG-TA 509216 Query 133575 TTTTG--CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| ||| | | |||| |||||||| | |||||| || | ||||| ||| || | Sbjct 509215 TTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTC 509156 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || ||||| ||||| Sbjct 509155 CCGTAAGCGTCTTCACAAAAATTTGCAT 509128 >seq11 Length=2126511 Score = 104 bits (114), Expect = 2e-17 Identities = 152/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATC-GCC-CATCGTGGACGAGTCCTCGA 133512 || || | ||||||||| ||||| || ||||| || ||| || ||| ||||| | Sbjct 229964 AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACA--TCCTCCA 229907 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||| || | || || |||| ||||||||| || ||||| |||||||| || | Sbjct 229906 ACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTCAA 229847 Query 133573 TCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 | ||||| || | | | | || ||| |||| | |||||| || | ||||| |||||| Sbjct 229846 T-TTTTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTT 229788 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| | ||||||||||| || ||||| Sbjct 229787 CCGGTTAATGTTTTTACGAATATTTGCAT 229759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418540007760