Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq13 150 1e-31 >seq13 Length=2073822 Score = 150 bits (166), Expect = 1e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||||| ||||| ||||| ||| || || || |||||||||||||| Sbjct 509811 ACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 509752 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || |||||||||||||| |||||||| | | ||||||||| | || Sbjct 509751 GAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGG 509692 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| |||||| |||| |||| || | || ||| |||||| | Sbjct 509691 AATGCCCTCCTTGTCCTGAATTTTGGCTTTC-ACATTTTCGATAGTATCGGATGATTCTA 509633 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || ||||||| ||| || ||||| || |||||| Sbjct 509632 CATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCATA 509583 Score = 147 bits (162), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| ||||| || ||||| ||||| ||| || || || ||||||||||| || Sbjct 509583 ACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGA 509524 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | |||| |||||||||||||| |||||||| | | ||||||||| | || Sbjct 509523 GAGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGG 509464 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| |||||| |||| |||| || | || ||| |||||| | Sbjct 509463 AATGCCCTCCTTGTCCTGAATTTTGGCTTTC-ACATTTTCGATAGTATCGGATGATTCTA 509405 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || ||||||| ||| || ||||| || |||||| Sbjct 509404 CATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCATA 509355 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| ||||| || ||||| ||||| ||| || || || ||||||||||| || Sbjct 509355 ACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGA 509296 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | |||| ||||||||||| |||||||| || | | |||||| || | || Sbjct 509295 GAGAGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATAAGTCTCTGCTGGTCGGGGGG 509236 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| ||||| ||| |||| || | |||||| ||| |||| Sbjct 509235 AATTCCCTCTTTGTCCTGTATTTTGGCCTTC-ACATTTTCAATCGTGTCGGATGACTCCA 509177 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | ||| || ||||| || |||||| Sbjct 509176 CATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCATA 509127 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||||| || || |||| ||| || || ||||||||||| ||||| Sbjct 510039 ACCACCTCTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGA 509980 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | |||| ||||||||||| |||||||| || | | ||||||||| | || Sbjct 509979 TAGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGG 509920 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || ||||| |||| |||| || | |||||| ||| |||| Sbjct 509919 AATTCCCTCTTTATCCTGTATTTTGGCTTTC-ACATTTTCAATCGTGTCGGATGACTCCA 509861 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | ||| || ||||| || |||||| Sbjct 509860 CATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCATA 509811 Score = 118 bits (130), Expect = 7e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||||| ||||| ||||| ||| || || || |||||||||||||| Sbjct 509127 ACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 509068 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || |||||||||||||| |||||||| | | |||||| || | || Sbjct 509067 GAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGGTCGGGGGG 509008 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| |||||| | | |||| || | ||||| ||| || | Sbjct 509007 AATTCCCTCTTTGTCCTGTATTTTC-GACTTTACATTCTCAATTGTGTCCGATGACTCGA 508949 Query 33701 CGTCAACCGTGATCGTTTTACCTG 33724 |||| | ||||| ||||| |||| Sbjct 508948 CGTCCAAGGTGATGGTTTTTCCTG 508925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702501726080