Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq13 111 4e-19 seq11 87.8 4e-12 >seq13 Length=2073822 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 206195 CAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAA 206254 |||||||||| ||||| ||||| || || || |||||| | || |||||| | Sbjct 508925 CAGGAAAAACCATCACCTTGGACGTCGAGTCATCGGACACAATTGAGAATGTAAAGTCGA 508984 Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 | || || || ||||| |||||| || ||| || ||||| || || || ||||| | Sbjct 508985 AAATACAGGACAAAGAGGGAATTCCCCCCGACCAGCAGAGACTCATTTTTGCGGGAAAAC 509044 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 | |||||||||||||| ||| | ||||||||||| ||||||| || || || || ||| Sbjct 509045 AATTGGAAGATGGAAGAACTCTCTCCGATTACAACATCCAGAAGGAATCCACCCTACAC 509103 Score = 105 bits (116), Expect = 2e-17 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| |||||||| || |||||| | || || ||| || || || ||||| Sbjct 509599 AAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCCGATACTATCGAAAAT 509658 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| ||||| || || || || ||| || || || ||||| || || Sbjct 509659 GTGAAAGCCAAA-ATTCAGGACAAGGAGGGCATTCCCCCTGATCAGCAGAGACTCATTTT 509717 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || |||||||||||||| ||| | ||||||||||| ||||||| || || Sbjct 509718 TGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAACATCCAGAAGGAATC 509777 Query 206364 TACTCTTCAC 206373 || || ||| Sbjct 509778 CACCCTACAC 509787 >seq11 Length=2126511 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACAC-AGTCGAATC 206243 ||||| | || |||||||| ||||| |||| ||||| || || || | | | | | Sbjct 229774 AAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCATCCGAAACGATTAGGAAC 229833 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||| ||||| ||| |||| || |||||||| || ||| || || || || | Sbjct 229834 GTTAAATCAAAA-ATTGAAGATAAGGAAGGAATCCCACCTGACCAGCAGAGGCTAATATA 229892 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 | |||||||||||||| |||| ||| | |||| || |||||| ||||||| ||||| Sbjct 229893 TTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGACTACAACATCCAGAAGGAGTC 229952 Query 206364 TACTCTTCAC 206373 || || ||| Sbjct 229953 CACCCTGCAC 229962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181815136862454