Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq11 116 4e-21 seq13 113 5e-20 >seq11 Length=2126511 Score = 116 bits (128), Expect = 4e-21 Identities = 155/210 (74%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568 ||| || ||||| ||||| || ||||||||||| |||| ||| | || || | || Sbjct 229962 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACA-TCCTCCAACT 229904 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 | || |||| | | || | | |||||| || || || || ||||| || |||| ||||| Sbjct 229903 GCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTCAATTT 229844 Query 134629 TTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || ||| || | | ||| || ||||| | ||||| || || || |||||||| ||| Sbjct 229843 TTGATTTAAC-GTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCG 229785 Query 134688 GTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| ||||| ||||| |||||||||||| Sbjct 229784 GTTAATGTTTTTACGAATATTTGCATTTTG 229755 >seq13 Length=2073822 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 ||||| || | |||||| ||||||||||| || |||||||| || | || | Sbjct 509570 CGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCG 509511 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||||| || |||||||| | | ||||||||| || || ||||| || || Sbjct 509510 TCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTG 509451 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || |||||||| ||| || || | || ||||| ||||| || || ||||| ||| Sbjct 509450 TCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATG 509391 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||| || || || ||||||||||| Sbjct 509390 GTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509356 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | || | ||||| || |||||||| || |||||||||||| Sbjct 510038 CCACCTCTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGAT 509979 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| ||| || | |||||||| ||||| || | | |||||||||||| || Sbjct 509978 AGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGA 509919 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| || || ||||| ||| || || | |||||||| || ||||| Sbjct 509918 ATTCCCTCTTTATCCTGTATTTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCACA 509859 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || ||||||||||| Sbjct 509858 TCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 509812 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || | || | |||||| ||||||||||| || |||||||| ||| Sbjct 509810 CCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAG 509751 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || | ||||| || |||||||| | | ||||||||| || || Sbjct 509750 AGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGA 509691 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || |||||||| ||| || || | || ||||| ||||| || Sbjct 509690 ATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACA 509631 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || |||| || || || ||||||||||| Sbjct 509630 TCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509584 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 ||||| || | |||||| ||||||||||| || |||||||| || | || | Sbjct 509342 CGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCG 509283 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | |||||||| ||||| || | | |||||| ||||| || || || ||||| Sbjct 509282 TCTTCCAATTGTTTGCCGGCAAATATAAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTG 509223 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || ||||| || || || | |||||||| || ||||| || || || ||| Sbjct 509222 TCCTGTATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATG 509163 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || | || || || ||||||||||| Sbjct 509162 GTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 509128 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 |||||| | | |||| | ||||| ||| | || |||||||||||||||||| | || Sbjct 559720 GCCATTCTGCAGAGTCAGATAGAAACGGGTGTTCCCTACATGCTGTACAAAGACTCCTGT 559779 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 || || ||| ||||| | || |||||||||| || ||||| || ||| ||| Sbjct 559780 AATGCTAAATCGAATCAGAAAAATTTGGGCACCATAAAATGTAGCAACCTCTGCTGCGAA 559839 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAA 8393 || || |||| | | | ||||||||||||||||| ||||| Sbjct 559840 ATCATAGAGTATACCTCTCCCGACGAAGTGGCCGTGTGCAA 559880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396037262480