Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq13 203 4e-47 >seq13 Length=2073822 Score = 203 bits (224), Expect = 4e-47 Identities = 970/1521 (64%), Gaps = 47/1521 (3%) Strand=Plus/Minus Query 68748 GTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 ||||||||||||||| || || || | ||||| || || ||||||||||||| ||| || Sbjct 560427 GTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGA 560368 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 |||||| ||||| || || | | | ||| || | ||| || | | ||||| | Sbjct 560367 TGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGC 560308 Query 68868 TTTTAGATGTTTCCAATCCCAA-AGATCAGATGGTAC---AACATTCCAAAGATCGTATT 68923 || || | | ||| |||||| | || || ||| ||||||||| | || | | Sbjct 560307 CTTCAGTTCATCCCAGTCCCAATACTTCTTATC-TACCTTAACATTCCACATGTCAAACT 560249 Query 68924 GTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAG 68983 | || ||||| | || || || | || || ||||| ||||| | | | | | Sbjct 560248 GAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGCTGGG 560189 Query 68984 CTAGTTCACAACTTGCC---TCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 69040 | || || || | | | || || ||||| ||||| || || |||||||| | || | Sbjct 560188 CCAGCTC-CA--TGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGT 560132 Query 69041 TGAGATCTTGTGCT---TCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTG 69097 | || |||| || || ||| | || | ||||| | ||| || || | |||| Sbjct 560131 TTAGCTCTTTAGCAGAATC-AGATT--CGTAGGGATACCTCAGAAGCATGAAGGTGTCTG 560075 Query 69098 CCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTG 69157 ||| ||||| || || || || || ||||| |||||||| || || | | || || Sbjct 560074 CCAGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCT 560015 Query 69158 GAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCA 69217 | || || ||||| | |||||||||| | | ||| ||| | | ||| | Sbjct 560014 CCACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAA 559955 Query 69218 CGTCCTTTAGTTTGAGAAAATCAAATCGTC-CATCTATA-----ACAAACATATTCAGTG 69271 || | || || ||| | |||| || | ||| | || || | ||| | Sbjct 559954 TTTCGTAGAGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCG 559895 Query 69272 CTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTG 69331 | | || || | || || || || || || | | | | ||| | ||| || || Sbjct 559894 CGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGC 559835 Query 69332 TACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGG 69391 || || || |||||||| || || |||| ||||| |||||| || ||||||| Sbjct 559834 AGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGG 559775 Query 69392 CGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCC 69451 ||| ||||| || || | ||| ||| ||||| |||||| | | ||| | || Sbjct 559774 AGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACC 559715 Query 69452 AAACGACCCTAGCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTAT 69508 | | | || ||| | ||||| || | | | || |||| ||||||| |||| Sbjct 559714 ATAGGTCCTGCGCA---AGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTAT 559658 Query 69509 ATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACA 69568 ||| | ||||||||| |||||||| || ||| || ||||||||||| || |||| Sbjct 559657 ATAACTTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACA 559598 Query 69569 TCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAG 69628 |||| | ||| | || ||||| |||| ||||||||||| || || | ||| | | Sbjct 559597 TCAAAGTCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGG 559538 Query 69629 CTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAA 69688 | || ||||| || | ||| ||||| ||||| |||||| ||| || | || Sbjct 559537 CGTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAA 559478 Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 | || | ||| || || ||||| ||||| | || | || | | || | | | | Sbjct 559477 ATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGAAGGAACC---TTTTCTCT 559421 Query 69749 TTCCTCCC---TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAA 69805 |||| ||| || |||| || || ||||||| |||| | || |||||||| || | | Sbjct 559420 TTCCCCCCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACTA 559361 Query 69806 TACCATTAGATTTACCATTTGTTC--CAGAAATATAACTTCCTCTTG--CGCGAATATTA 69861 || || || | || || || | | || || | || ||| | | ||||| Sbjct 559360 ACCCGTTGGAAATGCCGTTAGTCCCTCTGATGTACGAATT----TTGCCCCCTAATATCC 559305 Query 69862 CTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTG 69921 | | | || || || || ||| |||| || | ||||| | || | || Sbjct 559304 TGCACGGCCACTCCAATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTC 559245 Query 69922 TCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGA 69981 ||| |||| || || || || | ||||| || ||||||||| |||||| || Sbjct 559244 TCAAATATGCCTTCAATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGT 559185 Query 69982 TG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040 | || | || |||| ||| || || ||||| | |||||| ||||| | |||| ||| Sbjct 559184 GGCCTGGGT-GTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGA 559126 Query 70041 AAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGA 70099 | ||||| ||| || || | || |||| ||| || || || || || || | | Sbjct 559125 CATCAGATGGTACGTCTCTAGTGCCTTCTCTAGATCTCCTATG-TGGATCCCAATAGATA 559067 Query 70100 CACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATG 70159 | | ||||| || ||| || |||| || | | || ||| ||| | ||||| | Sbjct 559066 CTCTCATCAGCAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGG 559007 Query 70160 ATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAA 70219 | |||||| || ||||||||||| |||| ||| ||| |||||| ||| ||| Sbjct 559006 ACCTTTCCAATGTCTTAAACCCAAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCAATCT 558947 Query 70220 CAGAATTTAGTTTATCCTTAT 70240 | ||| | | ||||||||| Sbjct 558946 CCTTATTCAATCTATCCTTAT 558926 Score = 138 bits (152), Expect = 2e-27 Identities = 354/530 (67%), Gaps = 12/530 (2%) Strand=Plus/Minus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA-TTAGACC 39690 || || || ||||||| |||||||| || ||| || |||||||| ||| || | | Sbjct 1904628 TGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGCAATTTGTTC 1904569 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC-AGAAAAGAAGATGCCTTCTACTG 39749 |||| || | |||||| |||||| || ||| ||| | ||| | |||||| || || Sbjct 1904568 T-GCTTCTTAAACCAAAAGATGGCA-CAGAAGCTCCCACTAAATAGGATGCCCTCCACAC 1904511 Query 39750 CTGCAAATGCAACAAGTCTCTCTCCGTAAC---TTGTATCATTATGTATCCACTTCTGTG 39806 |||| || || | || ||| | || | |||||||| |||||| || || Sbjct 1904510 ATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATT---TATCCATTTGGCTG 1904454 Query 39807 CCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA-ATGT 39865 |||| |||||| || || ||| || || |||| || || | |||||||| || Sbjct 1904453 CCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATTCATTC 1904394 Query 39866 TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATG 39925 | | | || | ||||| | || | || || |||| || || | || |||||||| Sbjct 1904393 TCTCCTTCTCG-TCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATGGATA 1904335 Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAA 39985 || || | || || || || ||||||| |||| || || |||| || | Sbjct 1904334 TTCTCTACAGCAATTTGGAAGGCGTAAAATTTCTTTGCCTCGGTTATTTTCACTTGGCGT 1904275 Query 39986 CAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAAT 40045 ||||| | ||| | |||||| || ||||||||||| || ||||| || ||||| Sbjct 1904274 AAAAATTTGCTCGCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAGGCCAAC 1904215 Query 40046 ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTT 40105 || ||||| || |||| |||||||| | ||||| | | || || | ||| | Sbjct 1904214 ACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAATCGCTG 1904155 Query 40106 GATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 || | || | ||| || || ||||| || |||||||| ||||||||||| Sbjct 1904154 GACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTA 1904105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905588701360