Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 3e-15 >seq13 Length=2073822 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| || ||||| ||||| || || || || ||||||||| | | | | ||||||| Sbjct 510021 TACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCTTC 509962 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||| ||||| | ||||| | ||| ||||| || || | ||||||||||| Sbjct 509961 CAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCCTG 509902 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || ||| ||||| |||| | ||||| | | || || || || || || | || Sbjct 509901 TATTTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTT 509842 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| || || |||||||| ||||||||| Sbjct 509841 TCCCGTAAGCGTCTTCACAAAAATTTGCATA 509811 Score = 96.9 bits (106), Expect = 3e-15 Identities = 265/405 (65%), Gaps = 6/405 (1%) Strand=Plus/Minus Query 130778 AGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAAT 130837 ||||| || || |||||| || || ||| |||| ||||| ||||||||||| || | Sbjct 560441 AGGACCCGCCTGTAGTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGA 560382 Query 130838 ATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGC 130897 ||||| | |||| ||| || |||||| || | | || ||||| | | ||||||| Sbjct 560381 ATTTGAGAAGTAGATGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGC 560322 Query 130898 GTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATT---G 130954 || | |||||| ||||| ||||||||| ||||| | | | | || || Sbjct 560321 TTCTTAATTTTTGCCTTCAGTTCATCCCAGTCCCA---ATACTTCTTATCTACCTTAACA 560265 Query 130955 TTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAG 131014 |||||||| ||||| || || || |||| || || ||||| | | | | || || Sbjct 560264 TTCCACATGTCAAACTGAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATAT 560205 Query 131015 ATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCG 131074 ||| | | | ||||| || || |||||| || || ||||| ||||| ||| Sbjct 560204 GGTCCATACAGCTGGGCCAGCTCCATGGACATTTCCAACGCACCATAATACATGGTCTCG 560145 Query 131075 GCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATA 131134 |||| ||| |||| | ||| || | ||||| ||| | ||| | || Sbjct 560144 AAAATTCTTTTGTTTAGCTCTTTAGCAGAATCAGATTCGTAGGGATACCTCAGAAGCATG 560085 Query 131135 AAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGT 131179 || | |||||| || ||||| | || | ||| | ||||| ||| Sbjct 560084 AAGGTGTCTGCCAGCCCCTGCACACCTATGCCTATGGGTCTGTGT 560040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932463095888