Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq13 127 2e-24 >seq13 Length=2073822 Score = 127 bits (140), Expect = 2e-24 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || |||| ||| || || ||||| ||||| ||| || || | Sbjct 509369 ACAAAAATTTG--CATACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCT 509312 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||| | || |||| | |||| || | |||||||| ||||||||||| | Sbjct 509311 GGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATAAGTC 509252 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||||||||| ||| | | |||||||||| ||||| || | | | | || Sbjct 509251 TCTGCTGGTCGGGGGGAATTCCCTCTTTGTCCTGTATTTTGGCCTTCACATTTTCAATCG 509192 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | ||| |||||||| || | ||||| | |||||||| ||||| || ||||| |||| Sbjct 509191 TGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTT 509132 Query 39281 GCAT 39284 |||| Sbjct 509131 GCAT 509128 Score = 100 bits (110), Expect = 2e-16 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || |||||||| |||| ||||| ||||| ||| || || | Sbjct 509141 ACAAAAATTTG--CATACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCT 509084 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||||| || |||| | | || || | ||||| |||||||| || || | Sbjct 509083 GGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTC 509024 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||||||||| ||| | | |||||||||| |||||| || | || | | | Sbjct 509023 TCTGCTGGTCGGGGGGAATTCCCTCTTTGTCCTGTATTTTCGACTTTACATTCTCAATTG 508964 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCC 39257 | || ||||| ||||||| ||||| ||||||| Sbjct 508963 TGTCCGATGACTCGACGTCCAAGGTGATGGTTTTTCC 508927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543642077462