Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq13 125 5e-24 >seq13 Length=2073822 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || || |||||||| || ||||| || || || || || | Sbjct 509812 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 509871 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| ||||| || ||||| || | || || ||||| Sbjct 509872 GACACGATTGAAAATGTGAAAGCCAAAATACAGGATAAAGAGGGAATTCCCCCCGATCAG 509931 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | |||||||||||||||||| ||||||||| | | || || ||| |||||| Sbjct 509932 CAGAGACTCATATTTGCCGGCAAACAATTGGAAGACGGAAGAACCCTATCCGACTACAAC 509991 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || || || ||||| ||||| || | || |||| || Sbjct 509992 ATACAGAAGGAATCTACTTTACACTTAGTACTACGTCTGAGAGGTGG 510038 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || || |||||||| || ||||| || || || || || | Sbjct 509128 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 509187 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||||| |||||||| || | || || || || Sbjct 509188 GACACGATTGAAAATGTGAAGGCCAAAATACAGGACAAAGAGGGAATTCCCCCCGACCAG 509247 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | |||||||||||||||||| ||||||||| | | ||| | ||||||||| Sbjct 509248 CAGAGACTTATATTTGCCGGCAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 509307 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || ||||| |||| || || || | || ||||| || Sbjct 509308 ATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGG 509354 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || || || ||||| || |||||||| || || || || | Sbjct 509356 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 509415 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| | ||| |||||| ||||| || || | || || ||||| Sbjct 509416 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 509475 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || |||||| ||||||||| | | ||| | ||||||||| Sbjct 509476 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 509535 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || ||||| |||| || || || | || ||||| || Sbjct 509536 ATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGG 509582 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || || || ||||| || |||||||| || || || || | Sbjct 509584 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 509643 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| | ||| |||||| ||||| || || | || || ||||| Sbjct 509644 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 509703 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || |||||| ||||||| | | | ||| | |||||||||| Sbjct 509704 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 509763 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || ||||| |||| || || || | || |||| || Sbjct 509764 ATCCAGAAGGAATCCACCCTACACTTGGTCCTACGTTTAAGAGGTGG 509810 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 |||||||| ||||| | || || || || ||||||| |||| | |||| ||| Sbjct 508927 GGAAAAACCATCACCTTGGACGTCGAGTCATCGGACACAATTGAGAATGTAAAGTCGAAA 508986 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 || |||||||| || | || || || || ||| | | || ||||| || |||||| Sbjct 508987 ATACAGGACAAAGAGGGAATTCCCCCCGACCAGCAGAGACTCATTTTTGCGGGAAAACAA 509046 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 ||||||| | | | ||| | |||||||||||| || || || ||||| |||| || Sbjct 509047 TTGGAAGATGGAAGAACTCTCTCCGATTACAACATCCAGAAGGAATCCACCCTACACTTG 509106 Query 23818 GTTTTAAGGTTGCGAGGAGG 23837 || || | || |||| || Sbjct 509107 GTCCTACGTTTAAGAGGTGG 509126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008059309992