Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq13 140 5e-28 >seq13 Length=2073822 Score = 140 bits (154), Expect = 5e-28 Identities = 675/1066 (63%), Gaps = 17/1066 (2%) Strand=Plus/Minus Query 77156 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGA 77215 ||||||||||||||| || || || | ||||| ||||| |||| |||||||| |||||| Sbjct 560427 GTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGA 560368 Query 77216 AGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATC 77275 ||||| ||||| || || | | | ||| || | ||| || | | ||||| | Sbjct 560367 TGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGC 560308 Query 77276 TTTTAGATATTTCCAATCCCAA-AGATCTGAAGGTAC---AACATCCCAAAGATCGTATT 77331 || || | | ||| |||||| | ||| | ||| ||||| ||| | || | | Sbjct 560307 CTTCAGTTCATCCCAGTCCCAATACTTCTTATC-TACCTTAACATTCCACATGTCAAACT 560249 Query 77332 GTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAG 77391 | || ||||| | ||||| || | || || ||||| ||||| | | | Sbjct 560248 GAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGCTGGG 560189 Query 77392 CTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGA 77451 | || || | |||||| || || ||||| || || |||||||| | || || | Sbjct 560188 CCAGCTCCATGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGTTTA 560129 Query 77452 GATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATC 77511 | |||| || | | || | ||||| | ||| || |||| ||||| | | Sbjct 560128 GCTCTTTAGCAGAATCAGATTCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGCCAGCC 560069 Query 77512 CCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAG 77571 |||| || || || || || ||||| |||||||| ||||| || || || | | Sbjct 560068 CCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCCACGG 560009 Query 77572 GATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCT 77631 | || ||||| | |||||||||| | | ||| | || | ||| | || | Sbjct 560008 GGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATTTCGT 559949 Query 77632 TTAGTTTAAGAAAATCAAATCTTC-CATCTATA-----ACAAACATGTTCAAAGCTATAG 77685 || || ||| | |||| || | ||| | || || || || || || | Sbjct 559948 AGAGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCGCGATGG 559889 Query 77686 ATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATA 77745 | || | || || || || || || | | || ||| | ||| || ||| || | Sbjct 559888 AGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAGCAGA 559829 Query 77746 GATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCT 77805 | || |||||||| || ||||||| ||||| || || || ||| || ||||| | Sbjct 559828 GGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGGAGTCTT 559769 Query 77806 TATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGA 77865 | || || || | ||| || ||||| ||||| | | ||| | ||| | | Sbjct 559768 TGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCATAGGT 559709 Query 77866 CTCTAGCTTTTATCATAGATTTGTATCGCCTCTCT-CTT--TCATATTGAGTATATAGCC 77922 | || | | | ||| | | | | | | ||| ||||||| ||||||| | Sbjct 559708 CCTGCGCA---AGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTATATAACT 559652 Query 77923 GTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATG 77982 ||| ||||| |||||||| || ||| || || |||||||| ||||||||||| | Sbjct 559651 TTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACATCAAAG 559592 Query 77983 ACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 78042 ||| | || |||||| |||| |||||||| || ||||||| ||||| || | Sbjct 559591 TCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGGCGTAGA 559532 Query 78043 ATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCA 78102 | ||||| | | ||| | ||||| ||||| ||| || ||| || | ||| || | Sbjct 559531 ACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCGA 559472 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTC 78162 ||| || || ||||| ||||| | || | ||| | || || || || | Sbjct 559471 AAATGTCTGAGTGCCACGGTTCGATGTACACTGCGAAGGAACCTTTTCTCTTTCCCCCCC 559412 Query 78163 CCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGG 78208 | || |||| ||| || || |||| |||| |||| |||| |||||| Sbjct 559411 CTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGG 559366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665552423360