Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq13 165 1e-35 >seq13 Length=2073822 Score = 165 bits (182), Expect = 1e-35 Identities = 954/1512 (63%), Gaps = 29/1512 (2%) Strand=Plus/Minus Query 75751 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGA 75810 ||||||||||||||| || || || | ||||| ||||| |||| |||||||| ||| || Sbjct 560427 GTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGA 560368 Query 75811 AGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATC 75870 ||||||||||| || || | | | ||| || | ||| || | | ||||| | Sbjct 560367 TGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGC 560308 Query 75871 TTTTAGATATTTCCAATCCCAA-AGATCTGATGGTAC---AACATCCCAGAGATCGTATT 75926 || || | | ||| |||||| | ||| || ||| ||||| ||| | || | | Sbjct 560307 CTTCAGTTCATCCCAGTCCCAATACTTCTTATC-TACCTTAACATTCCACATGTCAAACT 560249 Query 75927 GTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAG 75986 | || ||||| | |||||| || | || || || || | || | | | | Sbjct 560248 GAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGCTGGG 560189 Query 75987 CTAGTTCGCAACTCGCC---TCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 76043 | || || || | | | || |||||||| ||||| || || |||||||| | || | Sbjct 560188 CCAGCTC-CA--TGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGT 560132 Query 76044 TAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTA 76103 | || |||| || | | || | ||||| | ||| || || | ||||| | Sbjct 560131 TTAGCTCTTTAGCAGAATCAGATTCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGCCA 560072 Query 76104 GTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAA 76163 | ||||| || || || || || ||||| |||||||| ||||| | || || | Sbjct 560071 GCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCCA 560012 Query 76164 TAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGT 76223 ||||| ||||| | |||||||||| | | ||| | | || | ||| | | Sbjct 560011 CGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATTT 559952 Query 76224 CCTTTAGTTTGAGAAAATCAAATTTTC-CATCT----ATC-ACAAACATATTAAGAGCTA 76277 | | || || ||| | ||||| || | ||| ||| || || | || || | Sbjct 559951 CGTAGAGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCGCGA 559892 Query 76278 TAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGC 76337 | || || | || || ||||| || || | | | || ||| | ||| || || || Sbjct 559891 TGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAGC 559832 Query 76338 ATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGT 76397 | || || ||||| || || || || | ||||| || || || ||||| |||| Sbjct 559831 AGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGGAGT 559772 Query 76398 CCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGA 76457 | || || || | | ||| || ||||| ||||| | | ||| | ||| | Sbjct 559771 CTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCATA 559712 Query 76458 CGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCT-CTT--TCATATTGTGTATATA 76514 | | || | | | ||| | | | | | | ||| ||||||| ||||||| Sbjct 559711 GGTCCTGCGCA---AGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTATATA 559655 Query 76515 ACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCA 76574 || ||| ||||| |||||||| || ||| || |||||||||||||| ||||||| Sbjct 559654 ACTTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACATCA 559595 Query 76575 ATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAA 76634 | | ||| | || |||||| || | |||||||| || ||||||| ||||| || Sbjct 559594 AAGTCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGGCGT 559535 Query 76635 TAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACT 76694 || ||||| | | ||| | ||||| ||||| ||| || ||| |||| || | Sbjct 559534 AGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATT 559475 Query 76695 CCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTAC 76754 | | ||| || || ||||| ||||| | || | || | ||| || || | Sbjct 559474 CGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGAAGGAACCTTTTCTCTTTCCCC 559415 Query 76755 CTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGT 76814 | || || |||| ||| || ||||||| |||| |||| |||| |||||| | | |||| Sbjct 559414 CCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACTAACCCGT 559355 Query 76815 TAGATGTACCATTTGTTC--CAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 | || | || || || | | || || | || | | | ||||| | | Sbjct 559354 TGGAAATGCCGTTAGTCCCTCTGATGTACGAATTTTGC--CCCCTAATATCCTGCACGGC 559297 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || || || ||| |||| || | ||||| | || | || ||| | || Sbjct 559296 CACTCCAATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTCTCAAATAT 559237 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAAC 76992 ||| || || || ||||| || ||||||||| |||||| || | Sbjct 559236 GCCTTCAATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGTGGCCTGGG 559177 Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 || || | ||| ||||| ||||| | ||| || ||||| | |||| ||| | |||| Sbjct 559176 TGTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGACATCAGATG 559117 Query 77053 GTATGTTTC-AATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| || || | | || | |||| ||| | | || || || | || || | ||||| Sbjct 559116 GTACGTCTCTAGTGCCTTC-TCTAGATCTCCTATGTGGATCCCAATAGATACTCTCATCA 559058 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 || ||| || |||| || | |||| ||| ||| | | ||| || |||||| Sbjct 559057 GCAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGACCTTTCCA 558998 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231 | || ||||| ||||| |||| ||| ||| |||||| ||| ||| || ||| | Sbjct 558997 ATGTCTTAAACCCAAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCAATCTCCTTATTCA 558938 Query 77232 GTTTGTCCTTAT 77243 | | ||||||| Sbjct 558937 ATCTATCCTTAT 558926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931067031680