Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq13 107 1e-18 >seq13 Length=2073822 Score = 107 bits (118), Expect = 1e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| | | ||| |||| ||| || ||| ||||| ||||||||||| Sbjct 509361 TTGCATACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTA 509302 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| | |||| |||| || || |||||||| || | | |||||| || Sbjct 509301 ATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATAAGTCTCTGCTGGTC 509242 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | || || || ||| ||| || ||||| || | || ||||||| || Sbjct 509241 GGGGGGAATTCCCTCTTTGTCCTGTATTTTGGCCTTCACATTTTCAATCGTGTCGGATGA 509182 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | || || ||||||||||| || |||||||| || |||||||| Sbjct 509181 CTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 509128 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| | | ||| |||| ||| || ||| ||||| ||||||||||| Sbjct 509589 TTGCATACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTA 509530 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| | |||| |||| || || || ||||| || | | ||||||||| Sbjct 509529 ATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATC 509470 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | || ||||| ||| || || |||| || | || || |||| || Sbjct 509469 AGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGA 509410 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || |||||||| || || |||||||| || |||||||| Sbjct 509409 TTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509356 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAA 44204 ||||| || |||||||| |||| || || || |||| |||| || || ||||||| Sbjct 510002 TCCTTCTGTATGTTGTAGTCGGATAG--GGTTCTTCCGTCTTCCAATTGTTTGCCGGCAA 509945 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 | || | | ||||||||| | || | || || || ||| ||| || |||| Sbjct 509944 ATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCCTGTATTTTGGCTTTCACAT 509885 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | || ||||||| || ||||| || | || || ||||||||||| || ||||||| Sbjct 509884 TTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCA 509825 Query 44325 CGAAGATTTGCAT 44337 | || |||||||| Sbjct 509824 CAAAAATTTGCAT 509812 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| ||||| |||||||||||||||| ||| | | || ||| Sbjct 509792 ACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCC 509733 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || || ||||| || | | ||||||||| | || | || ||||| ||| Sbjct 509732 AATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGA 509673 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || |||| || | || || |||| ||||| || || | || || |||||| Sbjct 509672 ATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTT 509613 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||| || |||||||| Sbjct 509612 CCTGTTAGCGTCTTCACAAAAATTTGCAT 509584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988759118758