Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq11 100 2e-16 seq13 95.1 1e-14 >seq11 Length=2067354 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| |||| ||||||||||| || ||||| ||||| |||| | | |||||| Sbjct 205879 ACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCC 205820 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | ||| || || | ||| || || ||||||||||| || | |||||||| || | Sbjct 205819 AACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTCA 205760 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 || ||| ||| || | | | || || | |||| |||| ||| ||||| || Sbjct 205759 ATTTTTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTT 205700 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||||||| ||||| || ||||||||||||||| Sbjct 205699 CCGGTTAATGTTTTTACGAATATTTGCATTTTG 205667 >seq13 Length=2031768 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| || |||| || ||| |||| |||| ||||| ||| Sbjct 490083 GTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTTCCC 490024 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| ||||||||||| || ||| | ||| |||||||| || || |||| Sbjct 490023 GCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTC 489964 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| |||||| | || || | || |||||||| || |||| ||| Sbjct 489963 ACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTC 489904 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 489903 TTCACAAAAATTTGCAT 489887 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| || || | || ||| | || |||| ||||| ||| Sbjct 489855 GTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCC 489796 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| ||||||||||| || ||| | ||| |||||||| || || |||| Sbjct 489795 GCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTC 489736 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| |||||| | || || | || |||||||| || |||| ||| Sbjct 489735 ACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTC 489676 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 489675 TTCACAAAAATTTGCAT 489659 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| || || | || ||| | || |||| ||||| ||| Sbjct 490311 GTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCC 490252 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| ||||||||||| || ||| | ||| |||||||| || || |||| Sbjct 490251 GCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTC 490192 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| |||||| | || || | || |||||||| || |||| ||| Sbjct 490191 ACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTC 490132 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 490131 TTCACAAAAATTTGCAT 490115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | || ||||| || ||||| || ||||| ||||| | Sbjct 490569 CCACCTCTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGAT 490510 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| |||| |||| |||||||| ||| | || ||||||||||| || ||| Sbjct 490509 AGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGA 490450 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTG--TTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | || || || || | | ||||| |||||| | | | || || | |||| Sbjct 490449 ATTCCCTCTTTATC--CTGTATTTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCA 490392 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| || || | ||| || ||||| |||||||| Sbjct 490391 CATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 490343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422245058011568