Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 3e-14 seq11 82.4 6e-11 >seq13 Length=2031768 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || |||||||| |||| | ||| | | |||| Sbjct 489870 AGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCT 489811 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| |||||| | || ||||| || ||||| ||| | ||| ||||| || Sbjct 489810 TCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 489751 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | | | ||| || | || |||| |||||| | Sbjct 489750 TGAATTT-TGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGT 489692 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | || || |||||||||||||| Sbjct 489691 CTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 489659 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| || || |||||||| |||| | ||| | | ||||||| Sbjct 490323 ACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCC 490264 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| |||||| | || ||||| || ||||| ||| | ||| ||||| || | Sbjct 490263 AATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGA 490204 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || || || | | | | ||| || | || |||| |||||| | || Sbjct 490203 ATTT-TGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTT 490145 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || | || || |||||||||||||| Sbjct 490144 TCCTGTTAGCGTCTTCACAAAAATTTGCAT 490115 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||| | || ||||| || || ||||||||||||| | ||| | | ||| Sbjct 490554 AGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCT 490495 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||||||||| ||| | || ||||| || ||||| ||| | || || ||||| Sbjct 490494 TCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCC 490435 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || || || | | ||| ||||| | ||| |||| ||||||| | Sbjct 490434 TGTATTT-TGGCTTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGT 490376 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | || || |||||||||||||| Sbjct 490375 CTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 490343 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| || || |||||||| || | | ||| | | |||||| Sbjct 490095 ACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCC 490036 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| |||||| | || ||||| || ||||| ||| | ||| ||||| || | Sbjct 490035 AATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGA 489976 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || || || | | | | ||| || | || |||| |||||| | || Sbjct 489975 ATTT-TGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTT 489917 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || | || || |||||||||||||| Sbjct 489916 TCCTGTTAGCGTCTTCACAAAAATTTGCAT 489887 >seq11 Length=2067354 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| ||| || || || || || || ||||||||||| |||| | ||| || Sbjct 205880 TACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTC 205821 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||| || || || | ||| || || || || || || || | ||||||||||| | Sbjct 205820 CAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTC 205761 Query 18236 AATTTGTTGCTTGACCTGTGC-AACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| ||| || | | | | || || || | ||| || | ||||||| ||| Sbjct 205760 AATTT-TTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTT 205702 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| ||||||||||| || ||||||||||| Sbjct 205701 TTCCGGTTAATGTTTTTACGAATATTTGCATTTT 205668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379331295295260