Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13 190 2e-43 >seq13 Length=2031768 Score = 190 bits (210), Expect = 2e-43 Identities = 977/1541 (63%), Gaps = 45/1541 (3%) Strand=Plus/Minus Query 22436 TCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAA 22495 || || | ||| || |||||||||| ||||| || | ||| || | | |||| Sbjct 541007 TCCTTCAGCAGGTGGGGGTTCACCACGAAGAACTCTCCACTGAGGACCCGCCTGTAGTAA 540948 Query 22496 ATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCG 22555 || || ||| |||| || || ||||| ||||| ||||| || |||| || || || Sbjct 540947 ATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGATGCA 540888 Query 22556 GTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTG 22615 |||||||| || || | || || || || ||||| |||||||| |||||| ||| Sbjct 540887 GTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGCCTTC 540828 Query 22616 AG--CATCGACCAGTCCCA------CAGATCGGACGGCGTCACATTGTCCCACATATCGT 22667 || |||| ||||||||| | ||| || | | ||||| |||||| || Sbjct 540827 AGTTCATC--CCAGTCCCAATACTTCTTATCT-AC--CTTAACATT---CCACATGTCAA 540776 Query 22668 ATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCG 22727 | || | | || | || || || || || | ||| || || || || ||||| | | Sbjct 540775 ACTGAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGCT 540716 Query 22728 CGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGT 22787 ||| || || | | |||||||| || ||||| || |||||||| ||| | |||| Sbjct 540715 GGGCCAGCTCCATGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGT 540656 Query 22788 TCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACG-CATCATCACGAACGCGTCCGCC 22846 | | || || | | |||||| || |||| || | || ||| | ||| ||| Sbjct 540655 TTAGCTCTTTAGCAGAATCAGATTCGTAGGG-ATACCTCAGAAGCATGAAGGTGTCTGCC 540597 Query 22847 ATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGC 22906 | ||||| || ||||| || || |||| || | || || || || ||||| | Sbjct 540596 AGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCC 540537 Query 22907 AAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATN 22966 | || || ||||| || || || || ||| || | ||| | |||||| || || Sbjct 540536 ACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATT 540477 Query 22967 NNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA-----ACAAACTTGTTGACGG 23021 | ||||| |||| | | || | || || || ||| | | Sbjct 540476 TCGTAGAGCTTCTTAAAGT--TAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCG 540419 Query 23022 CGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGG 23081 |||| ||||| | ||||| |||||||| ||||| || || ||||||| |||||| Sbjct 540418 CGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGC 540359 Query 23082 TACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACG 23141 || || |||||||| ||||| ||||||||||| |||| || ||| ||| || | Sbjct 540358 AGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGG 540299 Query 23142 AATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCC 23201 | || ||||| |||||||| || ||||| || | ||| || | || || || Sbjct 540298 AGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACC 540239 Query 23202 ACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGG--TA 23259 | | ||| || | || | | | | | ||||||||| || ||||| || Sbjct 540238 ATAGGTCCTGCGCAAGGACGGTTTTCTTGCCCATATTTTCTTCCTCATA--TTTGGTATA 540181 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 ||| || ||||| | || | | ||| || || || ||| |||| ||||| Sbjct 540180 TAACTTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACAT 540121 Query 23320 GAGACTCCACATTGAGTCATTTTC---AACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 | | |||| ||| | |||||| || | ||||||| || || |||| ||||| Sbjct 540120 CAAAGTCCA-ATT--TTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATAC 540064 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA--TCC 23434 ||||||||||| || | || | | ||| || || || ||| | |||| | || || Sbjct 540063 GGCGTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCC-GTGAT-TTTTGCGAAGGTCT 540006 Query 23435 AAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTC 23494 ||||| || || | ||| | |||||||| |||| ||| || || || | || |||| Sbjct 540005 AAAAATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGAAGGATCCTTTTCTC 539946 Query 23495 TTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACG 23554 || || || || || || || | || |||| || | || || ||||| || || Sbjct 539945 TTTCCCCCCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACT 539886 Query 23555 AGACCGTTGGACGCGCCGCCTACGCCCGC-CACACTCGAACCTTTTG--CTCGAACGTTG 23611 | |||||||| |||| || ||| | | |||| ||||| | | || | Sbjct 539885 AACCCGTTGGAAATGCCG-TTAGTCCCTCTGATGTACGAA--TTTTGCCCCCTAATATCC 539829 Query 23612 TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTG 23671 || ||| | || || || || ||| ||| |||| ||| || || || ||||| Sbjct 539828 TGCACGGCCACTCCAATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTC 539769 Query 23672 TCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGC 23731 || | ||||| || || |||| ||| | || | ||||| |||||||| || Sbjct 539768 TCAAATATGCCTTCAATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGT 539709 Query 23732 GCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGAC 23791 | |||| || | | ||||| || || | ||||| || || || | ||| Sbjct 539708 GGCCTGGGTGTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGAC 539649 Query 23792 ATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACG 23851 || |||| |||||| || | || || | || || ||| || || || | || Sbjct 539648 ATCAGATGGTACGTCTCTAGTGCCTTCTCTAGATCTCCTATGTGGATCCCAATAGATACT 539589 Query 23852 CGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAA 23911 | ||||| || | ||| |||||||| | | || |||||| | || || || Sbjct 539588 CTCATCAGCAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGAC 539529 Query 23912 CGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 | || || || ||||| ||||| ||||| || ||||| || Sbjct 539528 CTTTCCAATGTCTTAAACCCAAAGTAGTCGTAATTAAAATC 539488 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || ||||| || || ||||| | || || ||| | ||| Sbjct 489659 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 489718 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||||| || ||| | ||| ||||||||| ||| | || || || ||| Sbjct 489719 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 489778 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||| |||||||| | ||| | |||||| ||| Sbjct 489779 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 489838 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || || || |||| || Sbjct 489839 ATCCAGAAGGAATCCACCCTACACTTGGTCCT 489870 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || ||||| || || ||||| | || || ||| | ||| Sbjct 489887 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 489946 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||||| || ||| | ||| ||||||||| ||| | || || || ||| Sbjct 489947 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 490006 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||| ||||||||| | ||| | ||||| ||| Sbjct 490007 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 490066 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || || ||||| || || || |||| Sbjct 490067 ATCCAGAAGGAATCCACCCTACACTTGGT 490095 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || ||||| || || ||||| | || || ||| | ||| Sbjct 490115 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 490174 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||||| || ||| | ||| ||||||||| ||| | || || || ||| Sbjct 490175 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 490234 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||| |||||||| | ||| | |||||| ||| Sbjct 490235 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 490294 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || || ||||| || || || |||| Sbjct 490295 ATCCAGAAGGAATCCACCCTACACTTGGT 490323 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || || || |||||| | || || || | ||| Sbjct 490343 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 490402 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | |||| ||| || || || | || ||||| ||| Sbjct 490403 GACACGATTGAAAATGTGAAAGCCAAAATACAGGATAAAGAGGGAATTCCCCCCGATCAG 490462 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || ||||| || |||||||| ||||||||| | || | ||| || ||| Sbjct 490463 CAGAGACTCATATTTGCCGGCAAACAATTGGAAGACGGAAGAACCCTATCCGACTACAAC 490522 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || ||||| ||| | || | ||||| | ||||| || ||| Sbjct 490523 ATACAGAAGGAATCTACTTTACACTTAGTACTACGTCTGAGAGGTGGT 490570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445751087924160