Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13 152 6e-32 >seq13 Length=2031768 Score = 152 bits (168), Expect = 6e-32 Identities = 367/550 (67%), Gaps = 4/550 (1%) Strand=Plus/Minus Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 ||||| ||| || || || |||| |||||||| || ||| || ||||||||| || Sbjct 1883537 AAATCTGTGTGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGC 1883478 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 | | | |||| |||| |||||| |||| | ||| || ||| | ||| || Sbjct 1883477 AATTTGTTCTGCTTCTTAAACCAAAAGATGGCACAGAAGCTCCCACTAAATAGGATGCCC 1883418 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 33767 || || ||| ||| | | || ||| || || | | | |||| |||||| || Sbjct 1883417 TCCACACATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATTTATCCATTTG 1883358 Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33827 ||||| || || ||||| ||| || || |||| || || | |||||||| Sbjct 1883357 GCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATTC 1883298 Query 33828 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33887 || | || || ||||| | ||| | || ||||| | || || | |||||||| Sbjct 1883297 ATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATGG 1883238 Query 33888 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGCACTTC 33946 || || || | || || || || |||| ||| ||| |||||||| || | ||||| Sbjct 1883237 ATATTCTCTACAGCAATTTGGAAGGCGTA-AAATTTCTTTGCCTCGGTTATTTTCACTTG 1883179 Query 33947 T-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACG 34005 ||| ||| | | || |||| |||||| || |||||||||||||||||||| || | Sbjct 1883178 GCGTAAAAATTTGCTC-GCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAGG 1883120 Query 34006 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 34065 |||| || |||||||| |||| |||||| | ||| ||| | |||| || | || Sbjct 1883119 CCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAAT 1883060 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 | | || | || | ||| || | ||||| || || ||||| |||||||| || | || Sbjct 1883059 CGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTAAAAAT 1883000 Query 34126 TCCAGATGTC 34135 ||| | ||| Sbjct 1882999 CCCAAACGTC 1882990 Score = 143 bits (158), Expect = 3e-29 Identities = 955/1522 (63%), Gaps = 49/1522 (3%) Strand=Plus/Minus Query 62420 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62479 ||||||||||||||| ||||| || | ||| || || || |||| |||||||| ||| || Sbjct 540951 GTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGA 540892 Query 62480 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62539 |||||||||||| || || | | | ||| || | ||||| | | ||||| | Sbjct 540891 TGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGC 540832 Query 62540 TTTTAGATGTTCCCAATTCCAAAGATCCGACGGTAC---AACANNNNNNNNNNNATATTG 62596 || || | ||||| | |||| | | ||| |||| | | || Sbjct 540831 CTTCAGTTCATCCCAGTCCCAATACTTCTTATCTACCTTAACATTCCACATGTCAAACTG 540772 Query 62597 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAG 62655 || || || | || || | || ||| || || ||||||||||| | | || | Sbjct 540771 AAGGATTCCTTGGCTAGCTGGACTCCCCTGG-TAGGTCTCATATGGTCCATACAGCTGGG 540713 Query 62656 CTAGTTTACAACTCGCC---TCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTAT 62712 | || | || | | | || || ||||| ||||| ||||| || || || | || | Sbjct 540712 CCAGCTC-CA--TGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGT 540656 Query 62713 TTAGATCTTGTGCT---TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCG 62769 |||| |||| || || | || | ||||| | | || || || | ||| | Sbjct 540655 TTAGCTCTTTAGCAGAATCAGAT---TCGTAGGGATACCTCAGAAGCATGAAGGTGTCTG 540599 Query 62770 CTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTG 62829 | | || || ||||| || || || ||||| |||||||| || || | || || Sbjct 540598 CCAGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCT 540539 Query 62830 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCA 62889 | || || ||||| | |||||||||| | | ||| | | ||| | |||| | Sbjct 540538 CCACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAA 540479 Query 62890 CATCCTTCAGTTTGAGAAAATCAAAT-CGCCCATCT----ATT-ACAAACATGTTCAATG 62943 || | || || ||| | |||| | | | ||| || || || || || | Sbjct 540478 TTTCGTAGAGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCG 540419 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 63003 | | || |||| || |||||||| || || | | | | ||| | ||| || || Sbjct 540418 CGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGC 540359 Query 63004 TGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 63063 ||| || || ||||| || || || || ||||||| ||||| || ||||| | Sbjct 540358 AGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGG 540299 Query 63064 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 63123 || || || || ||| | ||| ||| ||||| |||||| | | ||| || || Sbjct 540298 AGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACC 540239 Query 63124 AGACGACTCGAGCCTTTATTATAGATTTGTATCTCCT-TTCTCTT--TCGTATAGAGTAT 63180 | | | | | || | | | ||| | | | | || |||| || ||| |||| Sbjct 540238 ATAGGTCCTGCGCA---AGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTAT 540182 Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACA 63240 | || |||||| || |||||||| | | ||| | |||||||||| ||| |||| Sbjct 540181 ATAACTTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACA 540122 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 |||| | ||| | | | ||||| |||| |||||||| || ||||| | ||| | | Sbjct 540121 TCAAAGTCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGG 540062 Query 63301 CTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360 | || ||||| || | ||| | || || ||||| ||| || ||| || | | Sbjct 540061 CGTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAA 540002 Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG--CCGTT- 63417 | | | ||| || || ||||||||||| | ||| | || | ||| || || Sbjct 540001 ATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGA-------AGGATCCTTTT 539949 Query 63418 -TGTTTCCTCCC---TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 | ||||| ||| || |||| || ||||| |||| |||| |||| |||| |||||| Sbjct 539948 CTCTTTCCCCCCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGG 539889 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG-GCACGAATATT 63532 | | ||||| || || || || || || ||| || | || | | ||||| Sbjct 539888 ACTAACCCGTTGGAAATGCCGTTAGTCCCTCTGATGTA-CGAATTTTGCCCCCTAATATC 539830 Query 63533 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 | | | || || || || ||| |||| || || || || | |||| || Sbjct 539829 CTGCACGGCCACTCCAATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGT 539770 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGA--TCATGTTAAGTAGAAAACAGCTAGACATT 63650 ||| | |||||||| || || ||| ||||| || ||||||||| |||||| Sbjct 539769 CTCAAATATGCCTTCAATTGAGTC--CGATTTCATGCAGAGGAGAAAACAGGAAGACATC 539712 Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 || | | | || |||| ||| || || ||||| | ||||| || || | |||| | Sbjct 539711 TGTGGCCTGGGTGTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGA 539652 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770 || | |||| ||||||||| | || |||| ||| | | || || || | | Sbjct 539651 GACATCAGATGGTACGTCTCTAGTGCCTTCTCTAGATCTCCTATGTGGATCCCAATAGAT 539592 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 || | ||| | || || || ||||| |||| || || || ||| | | |||| Sbjct 539591 ACTCTCATCAGCAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAG 539532 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63890 || ||||||| || ||||| ||||| |||| ||| ||| |||| | ||| ||| Sbjct 539531 GACCTTTCCAATGTCTTAAACCCAAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCAATC 539472 Query 63891 ACCGAATTGAGCTTATCCTTAT 63912 || ||| | ||||||||| Sbjct 539471 TCCTTATTCAATCTATCCTTAT 539450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629795965765440