Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq13 188 7e-43 >seq13 Length=2031768 Score = 188 bits (208), Expect = 7e-43 Identities = 931/1465 (64%), Gaps = 34/1465 (2%) Strand=Plus/Minus Query 37167 TGTA-TATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATG 37225 |||| || ||||| || || || || |||| || || || || | | |||||||| | Sbjct 540955 TGTAGTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAG 540896 Query 37226 TAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTC 37285 |||||||||| ||||| || || | |||||| ||| ||||| || || | |||||| Sbjct 540895 TAGATGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTT 540836 Query 37286 TCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAA----CCACATATCA 37341 | || ||||||| ||| ||||| | | | || | | |||| |||||| ||| Sbjct 540835 TTGCCTTCAGTTCATCCCAGTCCCA-ATACTTCTTATCTACCTTAACATTCCACATGTCA 540777 Query 37342 TATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATT 37401 | || || || |||| || |||||| | | || |||||||| ||||| || | Sbjct 540776 AACTGAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGC 540717 Query 37402 TTAGCTAGTTCGCAACTAGA-TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTAT 37460 | || || || || | | ||| | || ||||||| || || ||||||||| | | Sbjct 540716 TGGGCCAGCTC-CATGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTT 540658 Query 37461 ATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGC 37520 |||| ||| || || ||| | | ||| | || | || || || || Sbjct 540657 GTTTAGCTCTTTAGCAGAATCAGATTCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGC 540598 Query 37521 CAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTAT 37580 || ||||| ||||| || ||||||||||| ||| |||| || |||| | || Sbjct 540597 CAGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTC 540538 Query 37581 CACTGGATAATAATTGATATCTATTATTTTATTTAGATT---TTTAACTAGTATTTTCGT 37637 ||| || || ||||| | ||||| |||| | | ||| ||| || ||||| || Sbjct 540537 CACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAA-TA--ATTTTGGT 540481 Query 37638 AATTATTCTCAACTTGTCGAACATAAATACGTTATT------ATTAACAAATTTACTCAA 37691 |||| | ||| | || ||||| | | || || || ||||| | || Sbjct 540480 AATTTCGTAGAGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAG 540421 Query 37692 CGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTC 37751 || || || | | || || || || ||||| || || | | ||| || || Sbjct 540420 CGCGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTC 540361 Query 37752 TGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACA 37811 ||||| || || || | || || |||||||| | ||||| ||||| |||||| Sbjct 540360 GCAGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACA 540301 Query 37812 AGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTT 37871 || ||||| || || || || || || |||||| ||| || | ||| | Sbjct 540300 GGAGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAA 540241 Query 37872 CCATAAACTTCTTGCTTTAACGATCGCTTTAAt-----ttttttCTTTGTTTCGTATTCT 37926 |||| | || ||| || || | ||| | | ||||||| || |||| Sbjct 540240 CCAT--AGGTCCTGC-GCAAGGACGGTTTTCTTGCCCATATTTTCTT--CCTCATATTTG 540186 Query 37927 ATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGA 37986 ||||||| || | || || | |||||| |||| || ||||||||||| || Sbjct 540185 GTATATAACTTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGG 540126 Query 37987 CACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCAT 38046 ||||| | || ||| | || || || | ||| | | |||||||| |||||||||||| Sbjct 540125 CACATCAAAGTCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCAT 540066 Query 38047 AATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT 38105 | || ||| || | ||| | | ||| ||||| || || ||| || | | | Sbjct 540065 ACGGC-GTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTC 540007 Query 38106 TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 || ||| ||||| || || | |||||| ||||| || || | | | | |||| ||| Sbjct 540006 TAAAAATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGAAGGATCCTTTTCT 539947 Query 38166 TTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTAC 38225 || | || || || | | ||| ||| | |||| |||| | | || | ||| || || Sbjct 539946 CTTTCCCCCCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGAC 539887 Query 38226 TATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACT 38285 || || || || ||||||| | || || || | | | | | |||| Sbjct 539886 TAACCCGTTGGAAATGCCGTTAGTCCCTCTGATGTACGAATTTTGCCCCCTAATATCCTG 539827 Query 38286 TATCGACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTAT 38344 | | || ||| || ||||| || |||||| | || || || || || |||| || | Sbjct 539826 CACGGCCACTCCAATCCCACCAGC-CGTTTTGCTAATCAACGCACACTGCTTTAGAGTCT 539768 Query 38345 CAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAG 38404 ||||||| ||||| || ||| || || || | |||||| |||||| || | Sbjct 539767 CAAATATGCCTTCAATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGTG 539708 Query 38405 GCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACA 38464 || || || || | || || || ||||| | ||| || |||| | |||| |||| Sbjct 539707 GCCTGGGTGTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGACA 539648 Query 38465 AATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCC 38524 || || || |||| | | | |||| ||| || ||| || || | |||||| | Sbjct 539647 TCAGATGGTACGTCTCTAGTGCCTTCTCTAGATCTCCTATGTGGATCCCAATAGATACTC 539588 Query 38525 TCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATT 38584 |||| |||| |||||| ||||| || || || || ||| | ||| || || || Sbjct 539587 TCATCAGCAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGACC 539528 Query 38585 TTTCTAATGTTTTTATTCCAAAATA 38609 |||| ||||| || | ||||| || Sbjct 539527 TTTCCAATGTCTTAAACCCAAAGTA 539503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468508706173120