Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq13 140 4e-28 >seq13 Length=2031768 Score = 140 bits (154), Expect = 4e-28 Identities = 797/1265 (63%), Gaps = 44/1265 (3%) Strand=Plus/Minus Query 65466 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGG 65525 || || ||||| ||||| ||||| ||||| || | || ||||| |||| || || Sbjct 540695 TCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGTTTAGCTCTTTAGC----AGA 540640 Query 65526 CTATCAAAT------GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCA 65579 |||| || ||||| | | || || || | |||||| | || || ||||| Sbjct 540639 --ATCAGATTCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGCCAGCCCCTGCACACCT 540582 Query 65580 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 65639 || || || ||||| |||||||| || || | || || | || || ||||| Sbjct 540581 ATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCCACGGGGTAGTAATTC 540522 Query 65640 ATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGA 65699 | |||||||||| | | ||| | | ||| | |||| | || | || || | Sbjct 540521 CTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATTTCGTAGAGCTTCTTA 540462 Query 65700 AAATCAAAT-CGCTCATCT----ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTA 65753 || | |||| | ||| ||| || || || || || || | || |||| || Sbjct 540461 AAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCGCGATGGAGGCCAAGTTG 540402 Query 65754 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 65813 || ||||| || || | | | | ||| | ||| || || ||| || || ||||| Sbjct 540401 CACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAGCAGAGGTTGCTACAT 540342 Query 65814 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 65873 || ||||| || ||||||| ||||| || ||||| | || || || || ||| Sbjct 540341 TTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGGAGTCTTTGTACAGCATG 540282 Query 65874 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 65933 | ||| ||| ||||| |||||| | | ||| || ||| | | | | || Sbjct 540281 TAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCATAGGTCCTGCGCA--- 540225 Query 65934 ATTATAGATTTGTATCTCTT-TTCTCTTTCGTATAGT--GTATACAATCGTTCGAACTCG 65990 | | | ||| | | | | || |||| | ||| | ||||| || |||||| || Sbjct 540224 AGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTATATAACTTTTCGAATTCC 540165 Query 65991 TCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 66050 |||||||| | | ||| || |||||||||| ||| |||||||| | ||| | | Sbjct 540164 TCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTTA 540105 Query 66051 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTG 66110 | ||||| |||| |||||||| || ||||| | ||| | || || | ||| || Sbjct 540104 TTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGGCGTAGAACAGATCCCTC 540045 Query 66111 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAA 66170 | ||| | || || ||||| ||| || ||| || | || | | ||| || | Sbjct 540044 GCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAG 539985 Query 66171 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGG--CCGTT--TGTTTCCTCCC---TG 66223 ||||||||||| | ||| | || | ||| || || | ||||| ||| || Sbjct 539984 TGCCACGGTTCGATGTACACTGCGA-------AGGATCCTTTTCTCTTTCCCCCCCCTTG 539932 Query 66224 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 66283 |||| || ||||| |||| |||| |||| |||| |||||| | | || ||||| | Sbjct 539931 GTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACTAACCCGTTGGAAAT 539872 Query 66284 ACCATTGGTCCCGGAGATATA-GCTTCCACTTG--CACGAATATTACTAATTGATAGACC 66340 || || ||||| ||| || | | ||| | | ||||| | | | || Sbjct 539871 GCCGTTAGTCCCTCTGATGTACGAAT---TTTGCCCCCTAATATCCTGCACGGCCACTCC 539815 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || || || ||| |||| || || || || | |||| || ||| | ||||| || Sbjct 539814 AATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTCTCAAATATGCCTTC 539755 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 || || ||||| || ||||||||| |||||| || | | || || Sbjct 539754 AATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGTGGCCTGGGTGTCCC 539695 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 || ||| || || ||||| | ||||| || || | |||| ||| | |||| |||||| Sbjct 539694 CGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGACATCAGATGGTACGT 539635 Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 ||| | || |||| ||| | | || || || | | || | ||| | || || Sbjct 539634 CTCTAGTGCCTTCTCTAGATCTCCTATGTGGATCCCAATAGATACTCTCATCAGCAAATG 539575 Query 66581 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 66640 || ||||| |||| |||||| || ||| | | |||||| ||||||| || || Sbjct 539574 TTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGACCTTTCCAATGTCTT 539515 Query 66641 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700 ||| ||||| |||| ||| ||| |||| | ||| ||| || || | | |||| Sbjct 539514 AAACCCAAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCAATCTCCTTATTCAATCTATC 539455 Query 66701 CTTAT 66705 ||||| Sbjct 539454 CTTAT 539450 Score = 138 bits (152), Expect = 1e-27 Identities = 366/551 (66%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| ||| || || || |||| |||||||| || || || ||||||||| || Sbjct 1883537 AAATCTGTGTGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGC 1883478 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGAAAATTCC 36282 | | | |||| |||| |||||| |||| | || | | ||| | ||| | || || Sbjct 1883477 AATTTGTTCTGCTTCTTAAACCAAAAGATGG-CACAGAAGCTCCCACTAAATAGGATGCC 1883419 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 36342 || || ||| ||| | | || ||| || || | | |||| |||||| || Sbjct 1883418 CTCCACACATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATTTATCCATTT 1883359 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||| || || ||||| ||| || || | || || || | |||||||| Sbjct 1883358 GGCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATT 1883299 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462 || | || || ||||| | || | |||||||| | || || | |||||||| Sbjct 1883298 CATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATG 1883239 Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGTACTT 36521 || || || | || ||||| || |||| ||| ||| |||||||| || | |||| Sbjct 1883238 GATATTCTCTACAGCAATTTGGAAGGCGTA-AAATTTCTTTGCCTCGGTTATTTTCACTT 1883180 Query 36522 CT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 ||| ||| | | || |||| |||||| || ||||| |||||||||||||| || Sbjct 1883179 GGCGTAAAAATTTGCTC-GCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAG 1883121 Query 36581 GCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATA 36640 ||||| || |||||||| |||| |||||| || ||| ||| | |||| || | | Sbjct 1883120 GCCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAA 1883061 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 || | || | || | ||| || | ||||| || || ||||| |||||||| || | | Sbjct 1883060 TCGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTAAAAA 1883001 Query 36701 TTCCAGATGTC 36711 | ||| | ||| Sbjct 1883000 TCCCAAACGTC 1882990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658150191764320