Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_003521.1 Length=241087 Score E Sequences producing significant alignments: (Bits) Value seq2717 131 3e-25 seq2716 131 3e-25 seq2674 131 3e-25 seq2665 131 3e-25 seq2648 131 3e-25 seq2634 131 3e-25 seq2631 131 3e-25 seq2614 131 3e-25 seq2608 131 3e-25 seq2597 131 3e-25 seq2596 131 3e-25 seq2582 131 3e-25 seq2581 131 3e-25 seq2647 125 1e-23 seq2562 116 6e-21 seq2638 113 7e-20 seq2671 107 3e-18 seq2618 93.3 7e-14 >seq2717 Length=737 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 413 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 461 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| || ||| || ||| ||||||| |||| || |||||||||||| || Sbjct 462 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 519 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 520 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 574 >seq2716 Length=1087 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 672 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 720 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| || ||| || ||| ||||||| |||| || |||||||||||| || Sbjct 721 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 778 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 779 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 833 >seq2674 Length=1000 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 279 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 327 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| || ||| || ||| ||||||| |||| || |||||||||||| || Sbjct 328 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 385 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 386 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 440 >seq2665 Length=1196 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 1005 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 1053 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| || ||| || ||| ||||||| |||| || |||||||||||| || Sbjct 1054 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 1111 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 1112 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 1166 >seq2648 Length=1193 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 1009 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 1057 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| || ||| || ||| ||||||| |||| || |||||||||||| || Sbjct 1058 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 1115 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 1116 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 1170 >seq2634 Length=3618 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Minus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 642 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 594 Query 176732 TCAATGGGGCGGGGTT--TATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| ||| || ||| || ||||||| |||| || |||||||||||| || Sbjct 593 TCAATGGGGCGGAGTTGTTACGAC--ATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 536 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 535 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 481 >seq2631 Length=1036 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 347 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 395 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| || ||| || ||| ||||||| |||| || |||||||||||| || Sbjct 396 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 453 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 454 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 508 >seq2614 Length=2426 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Minus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 570 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 522 Query 176732 TCAATGGGGCGGGGTT--TATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| ||| || ||| || ||||||| |||| || |||||||||||| || Sbjct 521 TCAATGGGGCGGAGTTGTTACGAC--ATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 464 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 463 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 409 >seq2608 Length=1742 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 1063 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 1111 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| || ||| || ||| ||||||| |||| || |||||||||||| || Sbjct 1112 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 1169 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 1170 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 1224 >seq2597 Length=2249 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 1626 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 1674 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| || ||| || ||| ||||||| |||| || |||||||||||| || Sbjct 1675 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 1732 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 1733 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 1787 >seq2596 Length=1282 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 868 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 916 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| || ||| || ||| ||||||| |||| || |||||||||||| || Sbjct 917 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 974 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 975 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 1029 >seq2582 Length=1102 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 888 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 936 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| || ||| || ||| ||||||| |||| || |||||||||||| || Sbjct 937 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 994 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 995 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 1049 >seq2581 Length=1122 Score = 131 bits (144), Expect = 3e-25 Identities = 136/176 (77%), Gaps = 17/176 (10%) Strand=Plus/Minus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 188 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 140 Query 176732 TCAATGGGGCGGGGTT--TATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| ||| || ||| || ||||||| |||| || |||||||||||| || Sbjct 139 TCAATGGGGCGGAGTTGTTACGAC--ATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 82 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCATAC 176844 | | ||||||||||||||||||| || || | |||||| ||| | ||||| || Sbjct 81 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCAAAC 27 >seq2647 Length=1176 Score = 125 bits (138), Expect = 1e-23 Identities = 134/173 (77%), Gaps = 18/173 (10%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 992 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 1040 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| || ||| || ||| ||||||| |||| || |||||||||||| || Sbjct 1041 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCCA-AA 1097 Query 176790 CGGATGCCCATTGACGTCAATGGGGCGG-GATTATGGAAAGTCCCATTAGTCA 176841 | | ||||||||||||||||||| || || | |||||| ||| | ||||| Sbjct 1098 CAAACTCCCATTGACGTCAATGGGGTGGAGACT-TGGAAATCCCCGTGAGTCA 1149 >seq2562 Length=1047 Score = 116 bits (128), Expect = 6e-21 Identities = 111/142 (78%), Gaps = 15/142 (11%) Strand=Plus/Minus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 129 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 81 Query 176732 TCAATGGGGCGGGGTT--TATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| ||| || ||| || ||||||| |||| || |||||||||||| || Sbjct 80 TCAATGGGGCGGAGTTGTTACGAC--ATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 23 Query 176790 CGGATGCCCATTGACGTCAATG 176811 | | |||||||||||||||| Sbjct 22 CAAACTCCCATTGACGTCAATG 1 >seq2638 Length=1067 Score = 113 bits (124), Expect = 7e-20 Identities = 109/140 (78%), Gaps = 15/140 (11%) Strand=Plus/Minus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 127 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 79 Query 176732 TCAATGGGGCGGGGTT--TATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| ||| || ||| || ||||||| |||| || |||||||||||| || Sbjct 78 TCAATGGGGCGGAGTTGTTACGAC--ATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 21 Query 176790 CGGATGCCCATTGACGTCAA 176809 | | |||||||||||||| Sbjct 20 CAAACTCCCATTGACGTCAA 1 >seq2671 Length=1024 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 15/137 (11%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 901 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 949 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCCAGAA 176789 |||||||||||| || ||| || ||| ||||||| |||| || |||||||||||| || Sbjct 950 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCCAAAA 1007 Query 176790 CGGATGCCCATTGACGT 176806 | | ||||||||||| Sbjct 1008 CAAACTCCCATTGACGT 1024 >seq2618 Length=1053 Score = 93.3 bits (102), Expect = 7e-14 Identities = 90/116 (78%), Gaps = 15/116 (13%) Strand=Plus/Plus Query 176672 GCTCTGCTTATATAGACCGCCCATAGGGCACGCCTACCGCCCATTGACGTGTAATGTGCG 176731 |||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 951 GCTCTGCTTATATAGACCTCCCACCGTACACGCCTACCGCCCATT-----------TGCG 999 Query 176732 TCAATGGGGCGGGGT--TTATGACTCATATTGGAAATTCCCATTCATTTTGGTGCC 176785 |||||||||||| || ||| || ||| ||||||| |||| || ||||||||||| Sbjct 1000 TCAATGGGGCGGAGTTGTTACGA--CATTTTGGAAAGTCCCGTTGATTTTGGTGCC 1053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771323904113760