Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq13 192 8e-44 >seq13 Length=2031768 Score = 192 bits (212), Expect = 8e-44 Identities = 804/1256 (64%), Gaps = 26/1256 (2%) Strand=Plus/Minus Query 71428 TCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT---TCC 71484 || || || |||||||| ||||| |||||||| | || || || |||| || || Sbjct 540695 TCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGTTTAGCTCTTTAGCAGAATCA 540636 Query 71485 GGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATA 71544 | || | ||||| | | || || || | |||||| | || || || || || Sbjct 540635 GAT---TCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGCCAGCCCCTGCACACCTATG 540579 Query 71545 CCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATA 71604 || || |||||||||||||| || || | || || | || || ||||| | Sbjct 540578 CCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCCACGGGGTAGTAATTCCTC 540519 Query 71605 TCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAA 71664 |||||||||| | | ||| | | || | |||| | || | || || ||| Sbjct 540518 TCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATTTCGTAGAGCTTCTTAAAG 540459 Query 71665 TCAAAT-CTCCCATCT----ATT-ACAAACACGTTCAAGGCAACAGATGCCAGATTACAA 71718 | |||| ||| | ||| || || || | || || | || |||| || || Sbjct 540458 TTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCGCGATGGAGGCCAAGTTGCAC 540399 Query 71719 ACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTG 71778 ||||| || || | | | || ||| | ||| ||||| ||| || || ||||| || Sbjct 540398 ACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAGCAGAGGTTGCTACATTTT 540339 Query 71779 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAAC 71838 ||||| || ||||||| ||||| || ||||| | || || || || || | Sbjct 540338 ATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGGAGTCTTTGTACAGCATGTAG 540279 Query 71839 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 71898 ||| ||| ||||| |||||| | | ||| || ||| | | | | || | Sbjct 540278 GGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCATAGGTCCTGCGCAAGGACG 540219 Query 71899 ATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCC 71958 | |||||| | |||||| || |||| |||||||| |||||| || |||||| Sbjct 540218 GTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTATATAACTTTTCGAATTCCTCTCCC 540159 Query 71959 CAAGCATTGTCT-AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATC 72017 || | ||| || || || |||||||||||||| |||||||| | ||| | | || || Sbjct 540158 CATG-ATTCGCTCAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTTATTTTC 540100 Query 72018 ATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 72077 ||||||| |||||||| || ||||| | ||| | || || ||||| || | ||| Sbjct 540099 CTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGGCGTAGAACAGATCCCTCGCTCT 540040 Query 72078 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 72137 |||| || ||||| ||| || ||| || | || | | ||| || || ||||| Sbjct 540039 TAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAGTGCCA 539980 Query 72138 CGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC---TGATCTATGTA 72194 |||||| | ||| | || | ||| | | ||||| ||| || |||| || Sbjct 539979 CGGTTCGATGTACACTGCGAAGGATCC---TTTTCTCTTTCCCCCCCCTTGGTCTACATA 539923 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254 ||||| |||| |||| |||| |||| |||||| | | || ||||| || || || Sbjct 539922 CCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACTAACCCGTTGGAAATGCCGTTAGT 539863 Query 72255 CCCGGAGATATAGCTTCCACTG-GCACGAATAT--TGCTAATTGATAGACCTATTCCCCC 72311 ||| ||| || | || | | ||||| ||| | | | || || || || Sbjct 539862 CCCTCTGATGTA-CGAATTTTGCCCCCTAATATCCTGC--ACGGCCACTCCAATCCCACC 539806 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371 ||| |||| || || || || | |||| || ||| | ||||| || || || Sbjct 539805 AGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTCTCAAATATGCCTTCAATTGAGTC 539746 Query 72372 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 72431 ||||| || ||||||||| |||||| || | | || |||| ||| || Sbjct 539745 CGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGTGGCCTGGGTGTCCCCGAATTGAA 539686 Query 72432 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGC 72491 || ||||| | ||||| || || | |||| ||||| |||| ||||||||| | || Sbjct 539685 CAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGACATCAGATGGTACGTCTCTAGTGC 539626 Query 72492 TGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCT 72551 |||| ||| | | || || || | | || | ||| | || ||| || ||||| Sbjct 539625 CTTCTCTAGATCTCCTATGTGGATCCCAATAGATACTCTCATCAGCAAATGTTGCGGTCT 539566 Query 72552 TTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 72611 |||| |||||| ||| ||| | | |||||| ||||||| || ||||| ||||| Sbjct 539565 CTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGACCTTTCCAATGTCTTAAACCCAAA 539506 Query 72612 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTAT 72667 |||| ||| ||| |||| | ||| ||| || ||| | | ||||||||| Sbjct 539505 GTAGTCGTAATTAAAATCTCTTGTGTAGTCAATCTCCTTATTCAATCTATCCTTAT 539450 Score = 127 bits (140), Expect = 3e-24 Identities = 360/545 (66%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 ||||| ||| || || ||||||| |||||||| || || || ||||||||| || Sbjct 1883537 AAATCTGTGTGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGC 1883478 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC-AGAAAAGAAGATTCC 42189 | | | |||| |||| |||||| || | | || | | ||| | ||| | ||| || Sbjct 1883477 AATTTGTTCTGCTTCTTAAACCAAAAGATGG-CACAGAAGCTCCCACTAAATAGGATGCC 1883419 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 42249 || || ||| ||| | | || ||| || || | | |||| |||||| || Sbjct 1883418 CTCCACACATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATTTATCCATTT 1883359 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||| || || ||||| ||| || || |||| || || | |||||||| Sbjct 1883358 GGCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATT 1883299 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 || | || || ||||| | || | || ||||| | || || | || ||||| Sbjct 1883298 CATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATG 1883239 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG-GCCTCGGTAACCTGTACTT 42428 || || || | || || || || |||| ||| ||| |||||||| | | |||| Sbjct 1883238 GATATTCTCTACAGCAATTTGGAAGGCGTA-AAATTTCTTTGCCTCGGTTATTTTCACTT 1883180 Query 42429 CT-GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAAC 42487 ||| ||| | | || |||| |||||| || ||||| |||||||||||||| || Sbjct 1883179 GGCGTAAAAATTTGCTC-GCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAG 1883121 Query 42488 GCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATA 42547 ||||| || |||||||| |||| |||||| | ||||||| | |||| || | | Sbjct 1883120 GCCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAA 1883061 Query 42548 TCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATA 42607 || | || | || | ||| || ||||||| || || || || |||||||| || | | Sbjct 1883060 TCGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTAAAAA 1883001 Query 42608 TTCCA 42612 | ||| Sbjct 1883000 TCCCA 1882996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671116146368480