Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq13 105 7e-18 >seq13 Length=2031768 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||||||||||||| || || || | || ||||| || || ||||||||||| Sbjct 490113 CCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAG 490054 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | |||||| || ||| | || || | |||||||| || || Sbjct 490053 AGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGA 489994 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| |||||| ||| | | ||| | || || | | |||||| Sbjct 489993 ATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACA 489934 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | ||||| || || | || || || || ||||||||| Sbjct 489933 TCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCATA 489886 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||||||||||||| || || || | || ||||| || || |||||||||||| Sbjct 490341 CCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAG 490282 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | |||||| || ||| | || || | |||||||| || || Sbjct 490281 AGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGA 490222 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| |||||| ||| | | ||| | || || | | |||||| Sbjct 490221 ATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACA 490162 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | ||||| || || | || || || || ||||||||| Sbjct 490161 TCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCATA 490114 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| | || || || | || ||||| || || |||||||||||| Sbjct 489885 CCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAG 489826 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | |||||| || ||| | || || | |||||||| || || Sbjct 489825 AGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGA 489766 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| |||||| ||| | | ||| | || || | | |||||| Sbjct 489765 ATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACA 489706 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | ||||| || || | || || || || ||||||||| Sbjct 489705 TCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCATA 489658 Score = 89.7 bits (98), Expect = 5e-13 Identities = 189/279 (68%), Gaps = 5/279 (2%) Strand=Plus/Minus Query 157334 GGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAAT 157393 ||||| || || || ||||| || | ||| | ||||| | || | ||||||||| Sbjct 540140 GGACATTCATTCGGGCACATCAAAGTCCAATTTTTATTTTCCTTTACTCTCTTCATAAAT 540081 Query 157394 ATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATG 157453 | || || ||||||| |||| | || ||| | |||| | ||||| | || Sbjct 540080 AGGTCAGGTACCCATACGGCGTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGA 540021 Query 157454 TTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCT 157513 ||| || | || ||||| || | |||||| | ||||||||||| | ||||||||| Sbjct 540020 TTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCG 539961 Query 157514 TGGGCTCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCA-TATTATTAAAAAC 157569 || |||||||| ||| || ||||| || || | || | || | | ||||||||| Sbjct 539960 AAGGATCCTTTTCTCTTTCCCCCCCCTTGGTCTACAT-ACCTAGCAGTGTCATTAAAAAC 539902 Query 157570 TCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT 157608 | ||||||||| | | ||| ||| ||||||| || Sbjct 539901 CCTCAGCATTGGGACTAACCCGTTGGAAATGCCGTTAGT 539863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | ||||| || | |||||||| || ||||||||||| ||| Sbjct 490569 CCACCTCTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGAT 490510 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | |||||| || ||| | || || | ||||||||||| || Sbjct 490509 AGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGA 490450 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || ||||| ||| | | ||| | |||||| | | || || Sbjct 490449 ATTCCCTCTTTATCCTGTATTTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCACA 490390 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||| || || | || || || || ||||||||| Sbjct 490389 TCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCATA 490342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506996984055360