Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq13 131 2e-25 >seq13 Length=2031768 Score = 131 bits (144), Expect = 2e-25 Identities = 953/1525 (62%), Gaps = 55/1525 (4%) Strand=Plus/Minus Query 62369 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62428 ||||||||||||||| ||||| || | ||| || || || |||| |||||||| ||| || Sbjct 540951 GTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGA 540892 Query 62429 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62488 |||||||||||| || || | | | ||| || | ||||| | | ||||| | Sbjct 540891 TGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGC 540832 Query 62489 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTAC---AACNNNNNNNNNNNNNNNTTG 62545 || || ||||| | |||| | | ||| ||| || Sbjct 540831 CTTCAGTTCATCCCAGTCCCAATACTTCTTATCTACCTTAACATTCCACATGTCAAACTG 540772 Query 62546 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAG 62604 || || || | || || | || ||| || || || |||||||| | | || | Sbjct 540771 AAGGATTCCTTGGCTAGCTGGACTCCCCTGG-TAGGTCTCATATGGTCCATACAGCTGGG 540713 Query 62605 CTAGTTCACAACTCGCC---TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTAT 62661 | || || || | | | || || ||||| ||||| ||||| ||||| || | || | Sbjct 540712 CCAGCTC-CA--TGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGT 540656 Query 62662 TTAGATCTTGTGCTTCCAGGCTATCAAAT------GGATAATTTAAGAGAATAAACGCGT 62715 |||| |||| || || |||| || ||||| | | || || || | || Sbjct 540655 TTAGCTCTTTAGC----AGA--ATCAGATTCGTAGGGATACCTCAGAAGCATGAAGGTGT 540602 Query 62716 CCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 62775 | || | || || ||||| || || || ||||| |||||||| || || | || | Sbjct 540601 CTGCCAGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCT 540542 Query 62776 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62835 | | || || ||||| | |||||||||| | | ||| | | ||| | |||| Sbjct 540541 CCTCCACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGG 540482 Query 62836 CCACATCCTTCAGTTTGAGAAAATCAAAT-CGCCCATCT----ATT-ACAAACATGTTCA 62889 | || | || || ||| | |||| | | | ||| || || || || || Sbjct 540481 TAATTTCGTAGAGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACA 540422 Query 62890 AGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCT 62949 || | || |||| || || ||||| || || | | | | ||| | ||| || | Sbjct 540421 GCGCGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTT 540362 Query 62950 CAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 63009 | ||| || || ||||| || || || || ||||||| ||||| || |||| Sbjct 540361 CGCAGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTAC 540302 Query 63010 ACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 63069 | | || || || || ||| | ||| ||| ||||| |||||| | | ||| || Sbjct 540301 AGGAGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAA 540242 Query 63070 TCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCT-TTCTCTTTCGTATAGT--G 63126 ||| | | | | || | | | ||| | | | | || |||| | ||| | | Sbjct 540241 ACCATAGGTCCTGCGCA---AGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGG 540185 Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 63186 |||| || |||||| || |||||||| | | ||| || |||||||||| ||| | Sbjct 540184 TATATAACTTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGC 540125 Query 63187 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 ||||||| | ||| | | | ||||| |||| |||||||| || ||||| | ||| | Sbjct 540124 ACATCAAAGTCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATA 540065 Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 || || ||||| || | ||| | || || ||||| ||| || ||| || | Sbjct 540064 CGGCGTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTA 540005 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG--CCG 63364 || | | ||| || || ||||||||||| | ||| | || | ||| || Sbjct 540004 AAAATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGA-------AGGATCCT 539952 Query 63365 TT--TGTTTCCTCCC---TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63419 || | ||||| ||| || |||| || ||||| |||| |||| |||| |||| |||| Sbjct 539951 TTTCTCTTTCCCCCCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATT 539892 Query 63420 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG-GCACGAAT 63478 || | | ||||| || || || || || || ||| || | || | | ||| Sbjct 539891 GGGACTAACCCGTTGGAAATGCCGTTAGTCCCTCTGATGTA-CGAATTTTGCCCCCTAAT 539833 Query 63479 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63538 || | | | || || || || ||| |||| || || || || | |||| Sbjct 539832 ATCCTGCACGGCCACTCCAATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAG 539773 Query 63539 CGTGTCATAGATACCCTCTATGCTATCATCGA--TCATGTTAAGTAGAAAACAGCTAGAC 63596 || ||| | || || || || || ||| ||||| || ||||||||| |||| Sbjct 539772 AGTCTCAAATATGCCTTCAATTGAGTC--CGATTTCATGCAGAGGAGAAAACAGGAAGAC 539715 Query 63597 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63656 || || | | || |||| ||| || || ||||| | ||||| || || | ||| Sbjct 539714 ATCTGTGGCCTGGGTGTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTT 539655 Query 63657 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63716 | ||| | |||| ||||||||| | || |||| ||| | | || || || | Sbjct 539654 TGAGACATCAGATGGTACGTCTCTAGTGCCTTCTCTAGATCTCCTATGTGGATCCCAATA 539595 Query 63717 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAG 63776 | || | ||| | || || || ||||| |||| |||||| || ||| | | | Sbjct 539594 GATACTCTCATCAGCAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGG 539535 Query 63777 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63836 ||||| ||||||| || ||||| ||||| |||| ||| ||| |||| | ||| | Sbjct 539534 TAGGACCTTTCCAATGTCTTAAACCCAAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCA 539475 Query 63837 ATAACCGAGTTGAGTTTATCCTTAT 63861 || || || | | ||||||||| Sbjct 539474 ATCTCCTTATTCAATCTATCCTTAT 539450 Score = 131 bits (144), Expect = 2e-25 Identities = 353/535 (66%), Gaps = 4/535 (1%) Strand=Plus/Minus Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 ||||| ||| || || || |||| ||||||| || || || ||||||||| || Sbjct 1883537 AAATCTGTGTGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGC 1883478 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 | | | |||| |||| |||||| |||| | ||| ||| ||| | ||| || Sbjct 1883477 AATTTGTTCTGCTTCTTAAACCAAAAGATGGCACAGAAGCTCCCACTAAATAGGATGCCC 1883418 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 33489 || || ||| ||| | | || ||| || || | | | |||| |||||| || Sbjct 1883417 TCCACACATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATTTATCCATTTG 1883358 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33549 ||||| || || ||||| ||| || || |||| || || | |||||||| Sbjct 1883357 GCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATTC 1883298 Query 33550 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609 || | || || ||||| | ||| | || ||||| | || || | |||||||| Sbjct 1883297 ATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATGG 1883238 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGTACTTC 33668 || || || | || || || || |||| ||| ||| |||||||| || | |||| Sbjct 1883237 ATATTCTCTACAGCAATTTGGAAGGCGTA-AAATTTCTTTGCCTCGGTTATTTTCACTTG 1883179 Query 33669 T-GTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33727 ||| ||| | | || || | |||||| || ||||| |||||||||||||| || | Sbjct 1883178 GCGTAAAAATTTGCTC-GCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAGG 1883120 Query 33728 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33787 |||| || |||||||| |||| |||||| | ||| ||| | |||| || | || Sbjct 1883119 CCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAAT 1883060 Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 | | || | || | ||| || | ||||| || || ||||| |||||||| || Sbjct 1883059 CGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTA 1883005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622925801763680