Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq13 181 3e-40 >seq13 Length=2031768 Score = 181 bits (200), Expect = 3e-40 Identities = 973/1536 (63%), Gaps = 39/1536 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| || || || ||| |||| | || || | | |||||||||||||| Sbjct 539662 TTCACCCACGCAACACCTACGTTGTTCAATTCGGGGACACCCAGGCCACAGATGTCTTCC 539721 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || ||||| || ||||| || || || || || || ||||| || || ||| | Sbjct 539722 TGTTTTCTCCTCTGCATGAAATCGGACTCAATTGAAGGCATATTTGAGACTCTAAAGCAG 539781 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| | ||| ||| | || || || ||||| || | | || || || | | Sbjct 539782 TGTGCGTTGATTAGCAAAACGGCTGGTGGGATTGGAGTGGCCGTGCAGGATATTAGGGGG 539841 Query 363727 CAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || || ||||| | || || | || || || || ||| | || || ||||| | Sbjct 539842 CAAAATTCGTACATCAGAGGGACTAACGGCATT-TCCAACGGGTTAGTCCCAATGCTGAG 539900 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || ||| | | ||||| ||||| || ||||| || || |||||| | ||||| | || Sbjct 539901 GGTTTTTAATGACACTGCTAGGTATGTAGACCAAGGGGGGGGAAAGAGAAAAGGATCCTT 539960 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 || |||| |||| || || | || ||||| || ||| | || || || ||||| Sbjct 539961 CGCAGTGTACATCGAACCGTGGCACTCAGACATTTTCGAATTTTTAGACCTTCGCAAAAA 540020 Query 363906 -CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 ||||| ||| || || | | || | ||||||||||| || | ||||| |||||| Sbjct 540021 TCACGG-AAAGGAAGAGCTAAGAGCGAGGGATCTGTTCTACGCCGTATGGGTACCTGACC 540079 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTC 364024 ||||||||| | || ||| | ||| |||||| | | | ||||| | ||||||| Sbjct 540080 TATTTATGAAGAGAGTAAAGGAAAATAAAAATTGGACTTTGATGTGCCCGAATGAATGTC 540139 Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATG--TTGCTCTATACGAAAAGTATGAATC 364082 |||| | ||| |||||| || || | | | | ||||| ||| ||||| Sbjct 540140 CAGGGTTGAGCGAATCATGGGGAGAGGAATTCGAAAAGTTATATACCAAA--TATGA--- 540194 Query 364083 GGAGGGAAAGGCTCGTAAGACAA---TTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139 ||| | ||| | |||| || | | || ||| | |||||||||||||| || | Sbjct 540195 GGAAGAAAATATGGGCAAGAAAACCGTCCTTGCGCAGGACCTATGGTTTGCCATTCTGCA 540254 Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199 ||||| || || || ||||| ||| |||||||||| || || || || || Sbjct 540255 GAGTCAGATAGAAACGGGTGTTCCCTACATGCTGTACAAAGACTCCTGTAATGCTAAATC 540314 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 || ||| | | | || || || | |||||||| || ||| || || || || Sbjct 540315 GAATCAGAAAAATTTGGGCACCATAAAATGTAGCAACCTCTGCTGCGAAATCATAGAGTA 540374 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT-------TCCGG 364312 ||| |||||||||| ||||| || ||| | || || |||||||| | || Sbjct 540375 TACCTCTCCCGACGAAGTGGCCGTGTGCAACTTGGCCTCCATCGCGCTGTGCAAATTCGT 540434 Query 364313 CG-TTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT 364371 || | || | |||| | | ||| || || | || || || | ||| | | | Sbjct 540435 CGATGTGGAGAAGAGAGAA--TTTAACTTTAAGAAGCTCTACGAAATTACCAAAATTATT 540492 Query 364372 ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGT 364431 || ||||| | ||| | |||| || | |||||| || || | || ||| |||| Sbjct 540493 ACCCGCAATTTGGACCAAATTATAGAGAGGAATTACTACCCCGTGGAGGAGGCCAAGCGA 540552 Query 364432 TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATG 364491 || || | | | || | || || || | ||||| ||||| || || ||| || ||| Sbjct 540553 TCCAACAAGAGACACAGACCCATAGGCATAGGTGTGCAGGGGCTGGCAGACACCTTCATG 540612 Query 364492 ATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAA 364551 | || | | | | || || | ||| | ||||| || || || || Sbjct 540613 CTTCTGAGGTATCCCTACGAATCTGATTCTGCTAAAGAGCTAAACAAAAGAATTTTCGAG 540672 Query 364552 ACAATGTATTTTGCCGCAATG--ACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGT 364609 || ||||||| || || || | || | | || || |||| | | ||| | Sbjct 540673 ACCATGTATTATGGTGCGTTGGAAATG-TCCATG-GAGCTGGCCCAGCTGTATGGACCAT 540730 Query 364610 ACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATG 364669 | || || ||||| || | || |||| | |||||||| | ||||||| Sbjct 540731 ATGAGACCTACCAGGGGAGTCCAGCTAGCCAAGGAATCCTTCAGTTTGACATGTGGAATG 540790 Query 364670 TCACG--CCATCTGTCCGA-TGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATG 364726 | | | || | | ||| |||||||| || | || |||||||||| | Sbjct 540791 TTAAGGTAGATAAGAAGTATTGGGACTGGGATGAACTGAAGGCAAAAATTAAGAAGCACG 540850 Query 364727 GTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCG 364786 || | || ||||| || || |||||||| || || |||||| | || || || | Sbjct 540851 GTTTGAGGAATTCCCTTCTTCTTGCCCCCATGCCGACTGCATCTACTTCTCAAATTCTGG 540910 Query 364787 GAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCG 364846 | |||||||| | || || |||| || || ||| |||| | | ||||| || | Sbjct 540911 GGAACAACGAATCGTTTGAGCCGTACACCAGTAATATTTACTACAGGCGGGTCCTCAGTG 540970 Query 364847 GAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGG 364906 |||| || || || || |||| | ||||| || | ||||||||| || |||| Sbjct 540971 GAGAGTTCTTCGTGGTGAACCCCCACCTGCTGAAGGACCTCTTCGACCGCGGCCTCTGGG 541030 Query 364907 GTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGAT 364966 ||| ||||||| | | ||||||| || || ||| || ||||| | | Sbjct 541031 ATGAGGACATGAAGCAGCAGCTCATCGCGCACAACGGGAGTGTCCAATACATTAGCGAAA 541090 Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC----GAACT 365022 |||| | || ||||| | || || ||||| ||||| || || || |||| Sbjct 541091 TTCCCGCCGACTTGAAGGAGCTCTATAAGACCGTCTGGGAGAT---CAAGCAGAAGAAC- 541146 Query 365023 CTCATTGATATGGCGGCCGATCGCGGTGCTTTTATC 365058 |||| |||||||||||||| || || || || ||| Sbjct 541147 ATCATCGATATGGCGGCCGACCGGGGCGCCTTCATC 541182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303307710548936