Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq13 102 7e-17 seq11 98.7 8e-16 >seq13 Length=2031768 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 16739 GTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCC 16798 || || ||||| |||||||||||||||| | |||| | |||| |||||||||||||| Sbjct 490539 GTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCTTCCAATTGTTTGCCG 490480 Query 16799 GCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTT--GCTGCT 16856 ||| | || || | ||| || || || | |||||||| || |||| ||| | Sbjct 490479 GCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCCTGTATTTTGGCT--T 490422 Query 16857 TCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCG 16916 |||| | | | |||||| | |||| || | ||||||||| ||||| || |||| Sbjct 490421 TCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCG 490362 Query 16917 TTTTGACAAAAATCTGCAT 16935 | || |||||||| ||||| Sbjct 490361 TCTTCACAAAAATTTGCAT 490343 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||||| | || |||| || || ||||| ||||| || |||||||| || | Sbjct 490113 CCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAG 490054 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| ||||||||||| |||||| |||| || | ||| || || || Sbjct 490053 AGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGA 489994 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| ||||| ||| ||||| | | | ||| ||| | || Sbjct 489993 ATGCCCTCCTTGTCCTGAATTTTGGCT--TTCACATTTTCGATAGTATCGGATGATTCTA 489936 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| ||||| || ||||| || |||||||| ||||| Sbjct 489935 CATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 489887 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||||| | || |||| || || ||||| ||||| || |||||||| |||| Sbjct 490341 CCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAG 490282 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||||||||| |||||| |||| || | ||| || || || Sbjct 490281 AGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGA 490222 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| ||||| ||| ||||| | | | ||| ||| | || Sbjct 490221 ATGCCCTCCTTGTCCTGAATTTTGGCT--TTCACATTTTCGATAGTATCGGATGATTCTA 490164 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| ||||| || ||||| || |||||||| ||||| Sbjct 490163 CATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 490115 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| ||||| || |||||||| |||| | ||| | | || Sbjct 489870 AGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCT 489811 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||||||||| |||||| |||| || | ||| || || || | |||||| ||||| Sbjct 489810 TCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 489751 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||||| ||| ||||| | | | ||| ||| | || || | ||||||| Sbjct 489750 TGAATTTTGGCT--TTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGG 489693 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || ||||| || |||||||| ||||| Sbjct 489692 TCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 489659 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| ||||| || |||||||| |||| | ||| | | || Sbjct 489642 AGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCT 489583 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||||||||| |||||| |||| || | ||| ||||| || | ||||||||||| Sbjct 489582 TCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTCC 489523 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| | ||| || | | | ||||| | ||| |||| |||||||||| Sbjct 489522 TGTATTTTCGACTTTACATTCTCAATTGTGTCCGATGACTCGACGTCCAAGGTGATGGTT 489463 Query 16904 TTTCC 16908 ||||| Sbjct 489462 TTTCC 489458 >seq11 Length=2067354 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 16726 TACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTC 16785 ||||| ||||| ||||||||||| || ||||||||||| |||| || | ||||| Sbjct 205880 TACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTC 205821 Query 16786 CAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGC 16845 ||| || || || | ||| || |||| ||| ||||| || | || || || || | Sbjct 205820 CAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTC 205761 Query 16846 AATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTT 16905 ||||| || || | | | || ||| | |||| |||| |||||||||||| Sbjct 205760 AATTTTTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTT 205701 Query 16906 TCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||||| | ||||| || || || ||||||||| Sbjct 205700 TCCGGTTAATGTTTTTACGAATATTTGCATTTTG 205667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405074433096520