Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq13 141 1e-28 >seq13 Length=2031768 Score = 141 bits (156), Expect = 1e-28 Identities = 796/1263 (63%), Gaps = 40/1263 (3%) Strand=Plus/Minus Query 62477 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGG 62536 || || ||||| ||||| ||||| ||||| || | || ||||| |||| || || Sbjct 540695 TCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGTTTAGCTCTTTAGC----AGA 540640 Query 62537 CTATCAAAT------GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCA 62590 |||| || ||||| | | || || || | |||||| | || || ||||| Sbjct 540639 --ATCAGATTCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGCCAGCCCCTGCACACCT 540582 Query 62591 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62650 || || || ||||| |||||||| || || | || || | || || ||||| Sbjct 540581 ATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCCACGGGGTAGTAATTC 540522 Query 62651 ATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGA 62710 | |||||||||| | | ||| | | ||| | |||| | || | || || | Sbjct 540521 CTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATTTCGTAGAGCTTCTTA 540462 Query 62711 AAATCAAAT-CGCCCATCT----ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTA 62764 || | |||| | | | ||| || || || || || || | || |||| || Sbjct 540461 AAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCGCGATGGAGGCCAAGTTG 540402 Query 62765 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 62824 || ||||| || || | | | | ||| | ||| || || ||| || || ||||| Sbjct 540401 CACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAGCAGAGGTTGCTACAT 540342 Query 62825 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 62884 || ||||| || ||||||| ||||| || ||||| | || || || || ||| Sbjct 540341 TTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGGAGTCTTTGTACAGCATG 540282 Query 62885 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 62944 | ||| ||| ||||| |||||| | | ||| || ||| | | | | || Sbjct 540281 TAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCATAGGTCCTGCGCA--- 540225 Query 62945 ATTATAGATTTGTATCTCTT-TTCTCTTTCGTATAGT--GTATACAATCGTTCGAACTCG 63001 | | | ||| | | | | || |||| | ||| | ||||| || |||||| || Sbjct 540224 AGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTATATAACTTTTCGAATTCC 540165 Query 63002 TCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63061 |||||||| | | || || |||||||||| ||| |||||||| | ||| | | Sbjct 540164 TCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTTA 540105 Query 63062 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 63121 | ||||| |||| |||||||| || ||||| | ||| | || || ||||| || Sbjct 540104 TTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGGCGTAGAACAGATCCCTC 540045 Query 63122 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63181 | ||| | || || ||||| ||| || ||| || | || | | ||| || || Sbjct 540044 GCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAG 539985 Query 63182 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGG--CCGTT--TGTTTCCTCCC---TG 63234 ||||||||||| | ||| | || | ||| || || | ||||| ||| || Sbjct 539984 TGCCACGGTTCGATGTACACTGCGA-------AGGATCCTTTTCTCTTTCCCCCCCCTTG 539932 Query 63235 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 63294 |||| || ||||| |||| |||| |||| |||| |||||| | | || ||||| | Sbjct 539931 GTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACTAACCCGTTGGAAAT 539872 Query 63295 ACCATTGGTCCCTGAGATATAGCTTCCACTG-GCACGAATATTACTAATTGATAGACCTA 63353 || || |||||| ||| || | || | | ||||| | | | || | Sbjct 539871 GCCGTTAGTCCCTCTGATGTA-CGAATTTTGCCCCCTAATATCCTGCACGGCCACTCCAA 539813 Query 63354 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 63413 | || || ||| |||| || || || || | |||| || ||| | ||||| || | Sbjct 539812 TCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTCTCAAATATGCCTTCAA 539753 Query 63414 TACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 63473 | || ||||| || ||||||||| |||||| || | | || |||| Sbjct 539752 TTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGTGGCCTGGGTGTCCCCG 539693 Query 63474 CATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 63533 ||| || || ||||| | ||||| || || | |||| ||| | |||| |||||||| Sbjct 539692 AATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGACATCAGATGGTACGTCT 539633 Query 63534 CAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 63593 | | || |||| ||| | | || || || | | || | ||| | || || | Sbjct 539632 CTAGTGCCTTCTCTAGATCTCCTATGTGGATCCCAATAGATACTCTCATCAGCAAATGTT 539573 Query 63594 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 63653 | ||||| |||| |||||| || ||| | | |||||| ||||||| || |||| Sbjct 539572 GCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGACCTTTCCAATGTCTTAA 539513 Query 63654 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCT 63713 | ||||| |||| ||| ||| |||| | ||| ||| || || | | |||||| Sbjct 539512 ACCCAAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCAATCTCCTTATTCAATCTATCCT 539453 Query 63714 TAT 63716 ||| Sbjct 539452 TAT 539450 Score = 134 bits (148), Expect = 2e-26 Identities = 363/550 (66%), Gaps = 4/550 (1%) Strand=Plus/Minus Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 ||||| ||| || || || |||| |||||||| || || || ||||||||| || Sbjct 1883537 AAATCTGTGTGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGC 1883478 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGAAAATTCC 32785 | | | |||| |||| |||||| |||| | || | | ||| | ||| | || || Sbjct 1883477 AATTTGTTCTGCTTCTTAAACCAAAAGATGG-CACAGAAGCTCCCACTAAATAGGATGCC 1883419 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 32845 || || ||| ||| | | || ||| || || | | | |||| |||||| || Sbjct 1883418 CTCCACACATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATTTATCCATTT 1883359 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||| || || ||||| ||| || || | || || || | |||||||| Sbjct 1883358 GGCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATT 1883299 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 || | || || ||||| | || | |||||||| | || || | |||||||| Sbjct 1883298 CATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATG 1883239 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 || || || | || ||||| || |||| || | |||||||| || | |||| Sbjct 1883238 GATATTCTCTACAGCAATTTGGAAGGCGTAAAATTTCTTTGCCTCGGTTATTTTCACTTG 1883179 Query 33026 T-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33084 ||| ||| | | || |||| |||||| || ||||| |||||||||||||| || | Sbjct 1883178 GCGTAAAAATTTGCTC-GCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAGG 1883120 Query 33085 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33144 |||| || |||||||| |||| |||||| | ||| ||| | |||| || | || Sbjct 1883119 CCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAAT 1883060 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 | | || | || | ||| || | ||||| || || ||||| |||||||| || | || Sbjct 1883059 CGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTAAAAAT 1883000 Query 33205 TCCAGATGTC 33214 ||| | ||| Sbjct 1882999 CCCAAACGTC 1882990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633610234740800