Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq13 111 1e-19 seq11 93.3 4e-14 >seq13 Length=2031768 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || ||||||| | || |||||||| || Sbjct 490343 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 490402 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || |||| || |||| || || ||||| || ||||| || || || Sbjct 490403 GACACGATTGAAAATGTGAAAGCCAAAATACAG-GATAAAGAGGGAATTCCCCCCGATCA 490461 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||||||||||||||| ||||| | | || | ||| ||||| Sbjct 490462 GCAGAGACTCATATTTGCCGGCAAACAATTGGAAGACGGAAGAACCCTATCCGACTACAA 490521 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| || |||| ||||| ||| | || ||||| || Sbjct 490522 CATACAGAAGGAATCTACTTTACACTTAGTACTACGTCTGAGAGGTGG 490569 >seq11 Length=2067354 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| ||||| || || ||||| ||| ||||||| | || |||||| | || Sbjct 205670 AATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCATC 205729 Query 25058 TGACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || | || |||||| | | || || ||||| || ||||||||| Sbjct 205730 CGAAACGAT-TAGGAACGTTAAATCAAAAATTGA-AGATAAGGAAGGAATCCCACCTGAC 205787 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || | | | || || || || || |||| | ||||| || ||| Sbjct 205788 CAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGACTAC 205847 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || || || ||||| || || || || Sbjct 205848 AACATCCAGAAGGAGTCCACCCTGCACTTGGT 205879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433313487303620