Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq13 176 8e-39 seq11 129 1e-24 >seq13 Length=2031768 Score = 176 bits (194), Expect = 8e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| ||||||||||| ||||| || || |||||||| ||||||||||| || || ||| Sbjct 490329 CGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCA 490270 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| || || || || || || |||||||| || || || || |||||||| |||||| Sbjct 490269 TCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTG 490210 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || ||||| || || || || ||||| || || | ||||||||| || | |||||| Sbjct 490209 TCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATG 490150 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || ||||| || || || ||||| Sbjct 490149 GTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 490115 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||||||||| ||||| || || |||||||| ||||||||||| || || |||||||| Sbjct 489867 ACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCC 489808 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || || || || || || |||||||| || || || || |||||||| |||||||| ||| Sbjct 489807 AATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGA 489748 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || || || ||||| || || | ||||||||| || | |||||||| ||| Sbjct 489747 ATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTT 489688 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| || || || ||||| Sbjct 489687 CCTGTTAGCGTCTTCACAAAAATTTGCAT 489659 Score = 167 bits (184), Expect = 4e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| ||||||||||| ||||| || || |||||||| ||||| ||||| || || || Sbjct 490101 CGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCG 490042 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| || || || || || || |||||||| || || || || |||||||| |||||| Sbjct 490041 TCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTG 489982 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || ||||| || || || || ||||| || || | ||||||||| || | |||||| Sbjct 489981 TCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATG 489922 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || ||||| || || || ||||| Sbjct 489921 GTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 489887 Score = 161 bits (178), Expect = 2e-34 Identities = 145/182 (80%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||||||||| ||||| || || |||||||| ||||||||||| || || |||||||| Sbjct 489639 ACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCC 489580 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || || || || || || |||||||| || |||||||| ||||| || || ||||| || Sbjct 489579 AATTGTTTTCCCGCAAAAATGAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTCCTGT 489520 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | ||| || ||| || ||||| | ||| || || |||||||||||||||||| Sbjct 489519 ATTTTCGACTTTACATTCTCAATTGTGTCCGATGACTCGACGTCCAAGGTGATGGTTTTT 489460 Query 68433 CC 68434 || Sbjct 489459 CC 489458 Score = 136 bits (150), Expect = 7e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || || | ||| ||||||| || || || || || ||||| || ||||| || || || Sbjct 490560 AGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTT 490501 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| || || || ||||| ||||||||||| || || ||||| ||||| || || Sbjct 490500 CCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCT 490441 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || || || || || || ||||| | ||| || || || | |||| Sbjct 490440 TTATCCTGTATTTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTG 490381 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || ||||| || || || ||||| Sbjct 490380 ATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 490343 >seq11 Length=2067354 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| || |||||||| || |||||||| || || | | ||| |||| || Sbjct 205880 TACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTC 205821 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 |||||||| || | |||| || || || ||||| ||||| || |||||||| |||| Sbjct 205820 CAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTC 205761 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| |||| || ||| | || || || | || || || |||| |||||||||||| Sbjct 205760 AATTTTTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTT 205701 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||| || | || || |||||||| |||||| || Sbjct 205700 TCCGGTTAATGTTTTTACGAATATTTGCATTTTG 205667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921590742270560