Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 9e-15 seq11 86.0 4e-12 >seq13 Length=2031768 Score = 95.1 bits (104), Expect = 9e-15 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| |||||||| || ||||| || |||||| | |||||| || |||| | |||||| Sbjct 489546 ACCAGCAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATT 489605 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||| || ||||||||||| || || || |||| |||||||| |||| || Sbjct 489606 ACAACATCCAGAAGGAATCCACCCTACACTTGGTCCTACGTTTAAGAGGTGG 489657 Score = 95.1 bits (104), Expect = 9e-15 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| || ||||| || |||||| | |||||| || |||| | |||||||| Sbjct 490232 CAGCAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTAC 490291 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||||||||| || || || |||| || ||||||||||| || Sbjct 490292 AACATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGG 490341 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| || ||||| || |||||| | |||||| || |||| | |||||||| Sbjct 489776 CAGCAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTAC 489835 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||||||||| || || || |||| |||||||| |||| || Sbjct 489836 AACATCCAGAAGGAATCCACCCTACACTTGGTCCTACGTTTAAGAGGTGG 489885 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | ||||| || ||||| ||| | || ||| | | Sbjct 490343 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 490402 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || ||||| ||||||||||| | || | || Sbjct 490403 GACACGATTGAAAATGTGAAAGCCAAAATACAGGATAAAGAGGGAATTCCCCCCGATCAG 490462 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| || ||||| ||||||||| | ||||| || ||| | |||| ||||| Sbjct 490463 CAGAGACTCATATTTGCCGGCAAACAATTGGAAGACGGAAGAACCCTATCCGACTACAAC 490522 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAAT 22068 || ||||||||||||||| | || | ||| ||||| | |||| || | ||||| Sbjct 490523 ATACAGAAGGAATCTACTTTACACTTAGTACTACGTCTGAGAGGTGGTTTTTAAT 490577 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| || ||||| || |||||| | ||||| || |||| | | |||||| Sbjct 490004 CAGCAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTAC 490063 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||||||||| || || || |||| || ||||||||||| || Sbjct 490064 AACATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGG 490113 >seq11 Length=2067354 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||||||||| | ||||||||||| || |||||||| ||| |||| ||| || Sbjct 205667 CAAAATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGC 205726 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGT 21946 | |||||| | | |||| |||||||| ||||| || || | ||||| Sbjct 205727 ATCCGAAACGATTAGGAACGTTAAATCAAAAATTGAAGATAAGGAAGGAATCCCACCTG- 205785 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGA 22006 |||| ||||| || || | | | || || || | || ||| | | | |||| || Sbjct 205786 --ACCAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGA 205843 Query 22007 TTACAATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||| || |||||||| || || || || ||||| Sbjct 205844 CTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTA 205880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358112805952792