Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq13 134 3e-26 >seq13 Length=2031768 Score = 134 bits (148), Expect = 3e-26 Identities = 984/1569 (63%), Gaps = 60/1569 (4%) Strand=Plus/Minus Query 243892 CTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGA--GATATC 243949 |||||||| ||||| |||| || || ||||| ||||| || |||||| ||| || Sbjct 541188 CTGGTCGATGAAGGCGCCCCGGTCGGCCGCCATATCGATGATGTTCTTCTGCTTGATCTC 541129 Query 243950 TCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCG---ATGTTCTGC 244006 || ||| ||||| |||| ||| | || |||| | |||| |||| || Sbjct 541128 CCAGACG--GTCTTATAGAGCTCCTTCAAGTCGGCGGGAAT---TTCGCTAATGTATTGG 541074 Query 244007 ACCGAGCCCTTGTGGACGATGAGCTGGGTGCG-CATGTTATCGTTCCACAGGCCCAAGCG 244065 || || ||||| |||||||||| ||| ||||| || | ||| ||||| ||| Sbjct 541073 ACACTCCCGTTGTGCGCGATGAGCTGC-TGCTTCATGTCCTCATCCCAGAGGCC---GCG 541018 Query 244066 CTCCA---GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCG 244122 || | | ||| | |||||| ||||||||| |||||||| || || || Sbjct 541017 GTCGAAGAGGTCCTTCAGCAGGTGGGGGTTCACCACGAAGAACTCTCCACTGAGGACCCG 540958 Query 244123 GCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGC 244182 | | ||| | || ||| || |||||| | || |||| ||||| || || | Sbjct 540957 CCTGTAGTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGA 540898 Query 244183 CGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT 244242 || |||||||||||||| | | || || ||||||| |||||| ||| || Sbjct 540897 AGTAGATGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAAT 540838 Query 244243 GCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCA 244302 | || || | ||||||||| || | | | | || | ||| Sbjct 540837 TTTTGCCTTCAGTTCATCCCAGTCCCA-ATACTTCTTATCTACC-----TTAACATTCCA 540784 Query 244303 CATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACC 244362 |||||||||||| || | || | ||| | || || |||| ||||||| || || || Sbjct 540783 CATGTCAAACTGAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCC 540724 Query 244363 GTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 | |||||||||||| | | || | || | || || ||||||||||| || Sbjct 540723 ATACAGCTGGGCCAGCTCCATGGACATTTCCAACGCACCATAATACATGGTCTCGAAAAT 540664 Query 244423 CATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCC-CATCATCATGAA 244479 | ||||| | || || | ||| | | |||| || || || | |||||| Sbjct 540663 TCTTTTGTTTAGCTCTTTAGCA--GAATCAGATTCGTAGGG-ATACCTCAGAAGCATGAA 540607 Query 244480 GACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCAT 244539 | ||| ||||| |||||||| || ||||| ||||||||||||| ||||||||| ||| | Sbjct 540606 GGTGTCTGCCAGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTT 540547 Query 244540 GGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCAT 244599 ||| || ||||||||| | || | || || | | || | |||||||| || || Sbjct 540546 GGCCTCCTCCACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAAT 540487 Query 244600 GCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGAT 244659 | | ||| ||| || ||||| || || ||| | || Sbjct 540486 TTTGGTAATTTCGTAGAGCTTCTTAAAGT--TA--------AATTCTCTCTTCTCCACAT 540437 Query 244660 CCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTT 244719 | || || | | || |||| | ||||| |||||| |||||||| || || | Sbjct 540436 C--GACGAATTTGCACAGCGCGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGA 540379 Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 ||| |||| | || ||| ||||||||| || || || |||||||||| | | || Sbjct 540378 GGTATACTCTATGATTTCGCAGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTG 540319 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 ||| || || || || |||| ||| ||||| |||||| |||| | || || || | ||| Sbjct 540318 ATTCGATTTAGCATTACAGGAGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTG 540259 Query 244840 GGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-- 244897 || | | ||| |||||| || ||| || | ||||||| Sbjct 540258 ACTCTGCAGAATGGCAAACCATAGGTCCTGCGCAAGGACGGTTTT------CTTGCCCAT 540205 Query 244898 ----TCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG 244953 ||| |||| || ||| || | ||||| || ||||| ||| | Sbjct 540204 ATTTTCTTCCTCATATTTGGTATATAACTTTTCGAATTCCTCTCCCCATGATTCGCTCAA 540145 Query 244954 GCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCAT 245013 || || || ||||||||| | | |||| | ||||| || |||| ||| Sbjct 540144 CCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTTATTTTCCTTTACTCTCTTCAT 540085 Query 245014 GAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCC 245073 || ||||| || | ||| | ||| | ||| || ||||| | || |||| ||| || Sbjct 540084 AAATAGGTCAGGTACCCATACGGCGTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCC 540025 Query 245074 AGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGA 245132 ||| || || | || || ||||| || || | ||| |||||| || || ||||| | Sbjct 540024 -GTGATTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACA 539966 Query 245133 CAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG-CGTTG 245191 | |||| || || | ||| || || ||||| || ||| | || | | || Sbjct 539965 CTGCGAAGGATCCTTTTCTCTTTCCCCCCCCTTGGTCTACATACCTAGC-AGTGTCATTA 539907 Query 245192 AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCG 245251 || | | ||| | || |||| ||||| || |||||| || || ||||||| | Sbjct 539906 AAAACCCTCAGCATTGGGACTAACCCGTTGGAAATGCCGTTAGTCCCTCTGATGTACG-A 539848 Query 245252 CCCTTGCCCCTGAGGTTGCTG-ATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310 ||||||| | | ||| | || || || | || || || ||| || | Sbjct 539847 ATTTTGCCCCCTAATATCCTGCACGGCCACTCCAATCCCACCAGCCGTTTTGCTAATCAA 539788 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 || || ||| | || || |||||| || || |||||| |||||| ||| || Sbjct 539787 CGCACACTGCTTTAGAGTCTCAAATATGCCTTCAATTGAGTCCGATTTCATGCAGAGGAG 539728 Query 245371 AAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTG 245430 ||| ||||| |||| ||| ||| |||| | | ||| ||||||| || || | ||||| Sbjct 539727 AAAACAGGAAGACATCTGTGGCCTGGGTGTCCCCGAATTGAACAACGTAGGTGTTGCGTG 539668 Query 245431 GGTAAAGTA 245439 ||| || || Sbjct 539667 GGTGAAATA 539659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944306761948480