Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13 131 4e-25 >seq13 Length=2031768 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || |||| ||| || | ||| ||||| ||||||||||| || || Sbjct 489850 TTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAA 489791 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | ||| ||| | || || || || || ||||| ||||| |||||||| || Sbjct 489790 AATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATT 489731 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| |||||||| || || ||||| ||||| || || || ||||| || Sbjct 489730 TTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCAC 489671 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 489670 AAAAATTTGCAT 489659 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | ||| || | ||||||||| ||||||||||| || || Sbjct 490078 TTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAA 490019 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | ||| ||| | || || || || || ||||| ||||| |||||||| || Sbjct 490018 AATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATT 489959 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| |||||||| || || ||||| ||||| || || || ||||| || Sbjct 489958 TTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCAC 489899 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 489898 AAAAATTTGCAT 489887 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || |||| ||| || | ||| ||||| ||||||||||| || || Sbjct 490306 TTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAA 490247 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | ||| ||| | || || || || || ||||| ||||| |||||||| || Sbjct 490246 AATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATT 490187 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| |||||||| || || ||||| ||||| || || || ||||| || Sbjct 490186 TTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCAC 490127 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 490126 AAAAATTTGCAT 490115 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| || || | ||||||||| |||||||| || || || Sbjct 490534 TTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAA 490475 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | ||| ||| || ||| ||||| ||||||||||| ||||| |||||||| Sbjct 490474 TATGAGTCTCTGCTGA---TCGGGGGGAATTCCCTCTTTATCCTGTATTTTGGCTTTCAC 490418 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| || || || || || ||||| ||||| || || || ||||| Sbjct 490417 ATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTT 490358 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 490357 CACAAAAATTTGCAT 490343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179612865843144