Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq13 122 9e-23 seq11 93.3 5e-14 >seq13 Length=2031768 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| ||||||||| ||||| || | ||| ||||| || || |||||||| | Sbjct 490114 ACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGA 490055 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || | || || || || || ||||||| |||||| || | || Sbjct 490054 GAGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGG 489995 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | || |||||||||| ||| |||| | ||| | | | | || ||| ||||| | Sbjct 489994 AATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTA 489936 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| | |||||||| || || ||||||||||| ||||| |||||||| Sbjct 489935 CATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 489887 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| ||||||||| ||||| || | ||| ||||| || || |||||||| | Sbjct 490342 ACCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 490283 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || || | || || || || || ||||||| |||||| || | || Sbjct 490282 GAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGG 490223 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | || |||||||||| ||| |||| | ||| | | | | || ||| ||||| | Sbjct 490222 AATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTA 490164 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| | |||||||| || || ||||||||||| ||||| |||||||| Sbjct 490163 CATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 490115 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||||||||| | ||||| || | ||| ||||| || || |||||||| | Sbjct 489886 ACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 489827 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || || | || || || || || ||||||| |||||| || | || Sbjct 489826 GAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGG 489767 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | || |||||||||| ||| |||| | ||| | | | | || ||| ||||| | Sbjct 489766 AATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTA 489708 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| | |||||||| || || ||||||||||| ||||| |||||||| Sbjct 489707 CATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 489659 >seq11 Length=2067354 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| |||| ||| |||||| || || ||||| ||||||| | || | || || Sbjct 205879 ACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCC 205820 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||| || | |||| || | ||||||||| | ||| | | ||||| || | Sbjct 205819 AACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCT-TC 205761 Query 42120 ATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | |||||| || | ||| | | ||| ||| | |||||||| | ||||||||||| Sbjct 205760 AATTTTTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTT 205701 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || |||| || ||||| || ||||||||||| Sbjct 205700 TCCGGTTAATGTTTTTACGAATATTTGCATTTT 205668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543194140640320