Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 1e-15 seq11 89.7 5e-13 >seq13 Length=2031768 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||| | ||||||| | || |||||| Sbjct 490539 GTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCTTCCAATTGTTTGCCG 490480 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| | |||||| ||||| |||||||| ||||| || |||||||| ||||| Sbjct 490479 GCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCCTGTATTTTG-GCTTT 490421 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || || | ||||| || | || | |||||| || || | || Sbjct 490420 CACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGT 490361 Query 64426 TTTTACGAAAATTTGCAT 64443 || || ||||||||||| Sbjct 490360 CTTCACAAAAATTTGCAT 490343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| | || || | | ||||| | || || || Sbjct 489627 GTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCC 489568 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||||| | |||||||||||| |||||||| ||||| || |||||||| |||| Sbjct 489567 GCAAAAATGAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTCCTGTATTTTCGACTTT 489508 Query 64367 ACAACCTCCACTGTATC 64383 ||| ||| | ||| || Sbjct 489507 ACATTCTCAATTGTGTC 489491 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| | || || | ||||||| | || || || Sbjct 490083 GTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTTCCC 490024 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||||| | |||||| || || ||||| || || || || || | |||| ||||| Sbjct 490023 GCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTG-AATTTTGGCTTT 489965 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||||| | || || || | ||| | |||||| || || | || Sbjct 489964 CACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGT 489905 Query 64426 TTTTACGAAAATTTGCAT 64443 || || ||||||||||| Sbjct 489904 CTTCACAAAAATTTGCAT 489887 >seq11 Length=2067354 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || || || | | || || | |||||| || Sbjct 205867 GTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCCAACTGCTTTCCT 205808 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 | ||| || |||| ||||||||| || || |||||||| || |||| |||||| | ||| Sbjct 205807 GAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTCAATTTTT-GATTT 205749 Query 64367 ACAACCTCC--ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 | | ||| | || || || ||||| || | || | ||| || ||||| || | Sbjct 205748 A-ACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGGTTAATG 205690 Query 64425 TTTTTACGAAAATTTGCATTTT 64446 |||||||||| ||||||||||| Sbjct 205689 TTTTTACGAATATTTGCATTTT 205668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499627637201120