Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq13 104 2e-17 >seq13 Length=2031768 Score = 104 bits (114), Expect = 2e-17 Identities = 201/297 (68%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 94068 TTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTT 94127 ||| |||||| | || || || |||| |||||||| | ||||| ||||| |||| || Sbjct 539847 TTCGTACATCAGAGGGACTAACGGCATTTCCAACGGGTTAGTCCCAATGCTGAGGGTTTT 539906 Query 94128 CAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGT 94187 || || | || | || || ||||| || || || | ||| || || || ||||| || Sbjct 539907 TAATGACACTGCTAGGTATGTAGACCAAGGGGGGGGAAAGAGAAAAGGATCCTTCGCAGT 539966 Query 94188 CTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGG 94247 || |||| || |||||| | ||| | | || | ||||| || || || ||||| Sbjct 539967 GTACATCGAACCGTGGCACTCAGACATTTTCGAATTTTTAGACCTTCGCAAAAATCACGG 540026 Query 94248 CAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 || || | || || || || || |||||||| | ||||| || ||||| ||||| Sbjct 540027 AAAGGAAGAGCTAAGAGCGAGGGATCTGTTCTACGCCGTATGGGTACCTGACCTATTTAT 540086 Query 94308 GAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 ||| | || || |||| |||| | | | || || ||||||||||| || Sbjct 540087 GAAGAGAGTAAAGGAAAATAAAAATTGGACTTTGATGTGCCCGAATGAATGTCCAGG 540143 Score = 100 bits (110), Expect = 3e-16 Identities = 235/349 (67%), Gaps = 8/349 (2%) Strand=Plus/Plus Query 95074 AAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAG 95133 || |||||| ||| || | || ||| | ||||||||||| || || || || | || Sbjct 540844 AAGCACGGTTTGAGGAATTCCCTTCTTCTTGCCCCCATGCCGACTGCATCTACTTCTCAA 540903 Query 95134 ATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTG 95193 || || || |||||||| ||||| || || | |||| || | ||| |||||||||| Sbjct 540904 ATTCTGGGGAACAACGAATCGTTTGAGCCGTACACCAGTAATATTTACTACAGGCGGGTC 540963 Query 95194 CTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGG 95252 ||| || || ||| ||| | ||| ||||| || |||||| || | | || Sbjct 540964 CTCAGTGGAGAGTTCTTCGTGGTGAACCCCCACCTGCTGAAGGACCTCTTCGAC-CGCGG 541022 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCT--ACGCGC-CAACGGCTCCGTCCAGAA 95309 | |||| || ||| || ||| || | ||| ||||| |||||| ||||| | Sbjct 541023 CCTCTGGGATG---AGGACATGAAGCAGCAGCTCATCGCGCACAACGGGAGTGTCCAATA 541079 Query 95310 CATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCA 95369 ||| |||| || | ||| | |||| |||||| |||||||| ||||||||| ||| Sbjct 541080 CATTAGCGAAATTCCCGCCGACTTGAAGGAGCTCTATAAGACCGTCTGGGAGATCAAGCA 541139 Query 95370 GCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 | || |||| ||||||| ||| || |||||||| |||| Sbjct 541140 GAAGAACATCATCGATATGGCGGCCGACCGGGGCGCCTTCATCGACCAG 541188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494706206258080