Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 5e-13 >seq13 Length=2031768 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||| ||||| ||||| |||| || || || || || || ||||||||| Sbjct 490341 CCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAG 490282 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || | |||||||| || | || | || ||||||||| || || Sbjct 490281 AGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGA 490222 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| ||| || || | | ||||| || || | || || Sbjct 490221 ATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTAC 490163 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || || || || |||||||| ||||| Sbjct 490162 ATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 490115 Score = 82.4 bits (90), Expect = 7e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGA-TGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT 47470 ||||||||| | ||| ||||| ||||||| ||||| || || ||| | || | | Sbjct 1883662 GGAATGAACTCA-AGACTGATGTCTCAGTACATAGAATTCGTGGCGGACAGATTGTTAGA 1883720 Query 47471 TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 || || |||||| || | |||| | |||| || ||| | | ||| || ||| Sbjct 1883721 GTGTCTGGGGTCTCCCAAAATATTCCACGCGAAGAACCCCTTCAACTGGATGGACCTCAT 1883780 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579 ||| || ||||||| |||||||||||||||||||| |||| ||| ||| Sbjct 1883781 TTCTCTGCAGGGCAAAACCAACTTTTTCGAGAAGCGGGTCGCCGACTAT 1883829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475484466547520