Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq13 114 1e-20 >seq13 Length=2031768 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || |||||| || ||| | ||| ||||||||| Sbjct 489861 TGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGT 489802 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || ||||| || || |||||||| || || || |||||||| Sbjct 489801 TTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTG 489742 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | || ||||| || || || || ||||| | || || || ||| Sbjct 489741 GCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTT 489682 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||||||||| Sbjct 489681 AGCGTCTTCACAAAAATTTGCAT 489659 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || |||||| || ||| | ||| ||||||||| Sbjct 490317 TGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGT 490258 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || ||||| || || |||||||| || || || |||||||| Sbjct 490257 TTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTG 490198 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | || ||||| || || || || ||||| | || || || ||| Sbjct 490197 GCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTT 490138 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||||||||| Sbjct 490137 AGCGTCTTCACAAAAATTTGCAT 490115 Score = 114 bits (126), Expect = 1e-20 Identities = 436/678 (64%), Gaps = 15/678 (2%) Strand=Plus/Plus Query 123618 CCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACA 123677 || |||||||| ||||||||| |||| || ||| | ||||||| || ||||| || Sbjct 540277 CCCTACATGCTGTACAAAGACTCCTGTAATGCTAAATCGAATCAGAAAAATTTGGGCACC 540336 Query 123678 ATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCC 123737 ||||||||||| || || |||| |||||| || || || | | | |||| |||||||| Sbjct 540337 ATAAAATGTAGCAACCTCTGCTGCGAAATCATAGAGTATACCTCTCCCGACGAAGTGGCC 540396 Query 123738 GTGTGTAATTTGGCTTCGAT-TTGC-GTG---AATCGTTG-CGTCGAAAACGGCGCTTTT 123791 ||||| || ||||| || || || ||| | |||| | || || || | | ||| Sbjct 540397 GTGTGCAACTTGGCCTCCATCGCGCTGTGCAAATTCGTCGATGTGGAGAAGAGAGAATTT 540456 Query 123792 AATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATC 123851 || || | | |||| | || || |||| | | |||||| || ||||||| Sbjct 540457 AACTTTAAGAAGCTCTACGAAATTACCAAAATTATTACCCGCAATTTGGACCAAATTATA 540516 Query 123852 GATGTTAATTTTTATCCTTTGGAGGAAGC---GCGTTTGTCTAATTTGAAACACAGACCG 123908 || |||| || || ||||||| || ||| || || || ||||||||| Sbjct 540517 GAGAGGAATTACTACCCCGTGGAGGAGGCCAAGCG---ATCCAACAAGAGACACAGACCC 540573 Query 123909 GTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAA 123968 | || | || | || ||| |||| ||| | || | | ||| | || |||||| Sbjct 540574 ATAGGCATAGGTGTGCAGGGGCTGGCAGACACCTTCATGCTTCTGAGGTATCCCTACGAA 540633 Query 123969 AGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTG 124028 || || || ||| || | ||| ||| || || ||||| || || ||| Sbjct 540634 TCTGATTCTGCTAAAGAGCTAAACAAAAGAATTTTCGAGACCATGTATTATGGTGCGTTG 540693 Query 124029 GAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCG 124088 || | | || || || | | | || | || || | ||| ||| || || Sbjct 540694 GAAATGTCCATGGAGCTGGCCCAGCTGTATGGACCATATGAGACCTACCAGGGGAGTCCA 540753 Query 124089 GCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTA---CACCGACAAATTTGTGG 124145 || |||| ||| || | |||| ||||||||||||| || | | || | ||| Sbjct 540754 GCTAGCCAAGGAATCCTTCAGTTTGACATGTGGAATGTTAAGGTAGATAAGAAGTATTGG 540813 Query 124146 GACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTG 124205 |||||| | | || | || || |||||||||| | || || || | | Sbjct 540814 GACTGGGATGAACTGAAGGCAAAAATTAAGAAGCACGGTTTGAGGAATTCCCTTCTTCTT 540873 Query 124206 GCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCG 124265 || ||||||||| ||| | ||| |||||||| | || ||||||||||| || |||||| Sbjct 540874 GCCCCCATGCCGACTGCATCTACTTCTCAAATTCTGGGGAACAACGAATCGTTTGAGCCG 540933 Query 124266 TTCACTAACAATTTGTAC 124283 | ||| | ||| | ||| Sbjct 540934 TACACCAGTAATATTTAC 540951 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || ||||| || ||| | || ||||||||| Sbjct 490089 TGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGT 490030 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || ||||| || || |||||||| || || || |||||||| Sbjct 490029 TTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTG 489970 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | || ||||| || || || || ||||| | || || || ||| Sbjct 489969 GCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTT 489910 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||||||||| Sbjct 489909 AGCGTCTTCACAAAAATTTGCAT 489887 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || |||||||| || || || || ||| | |||| | || ||||||||||| || Sbjct 490539 GTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCTTCCAATTGTTTGCCG 490480 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || |||| | || ||||| || || ||||| || |||||||| || ||||| ||| Sbjct 490479 GCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCCTGTATTTTGGCTTTC 490420 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | |||||||| ||||| || || || || | || || || || || || Sbjct 490419 ACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTC 490360 Query 45324 TTTACAAAAATTTGCAT 45340 || |||||||||||||| Sbjct 490359 TTCACAAAAATTTGCAT 490343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451987673690080