Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq13 129 1e-24 seq11 87.8 4e-12 >seq13 Length=2031768 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || || ||||| |||| |||||| || | | ||| ||||||||| Sbjct 489870 AGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCT 489811 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || ||||| || || ||||| | |||||| || || ||| || || ||| Sbjct 489810 TCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 489751 Query 199538 TGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| |||| ||| ||||| || || | || ||||||||| | ||||| || Sbjct 489750 TGAAT-TTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGT 489692 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||||||||| Sbjct 489691 CTTTCCTGTTAGCGTCTTCACAAAAATTTG 489662 Score = 125 bits (138), Expect = 2e-23 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| | ||| || || || ||||| |||| |||||| || | | ||| |||||||| Sbjct 490327 CAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATC 490268 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| || ||||| || || ||||| | |||||| || || ||| || || || Sbjct 490267 TTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 490208 Query 199537 CTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 |||||| ||| |||| ||| ||||| || || | || ||||||||| | ||||| | Sbjct 490207 CTGAAT-TTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGG 490149 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || || || |||||||||||||| Sbjct 490148 TCTTTCCTGTTAGCGTCTTCACAAAAATTTG 490118 Score = 122 bits (134), Expect = 2e-22 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| | ||| || || || ||||| |||| |||||| || | | ||| ||||| || Sbjct 490099 CAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTC 490040 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| || ||||| || || ||||| | |||||| || || ||| || || || Sbjct 490039 TTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 489980 Query 199537 CTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 |||||| ||| |||| ||| ||||| || || | || ||||||||| | ||||| | Sbjct 489979 CTGAAT-TTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGG 489921 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || || || |||||||||||||| Sbjct 489920 TCTTTCCTGTTAGCGTCTTCACAAAAATTTG 489890 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| | ||| || ||||| || | ||||||||| | | || ||||| ||| Sbjct 490554 AGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCT 490495 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || || ||||| || ||||| | |||||| || || |||||| ||| ||| Sbjct 490494 TCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCC 490435 Query 199538 TGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| |||| ||| ||| | ||||| | || || ||||| | ||||| || Sbjct 490434 TGTAT-TTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGT 490376 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || |||||||||||||| Sbjct 490375 CTTTCCCGTAAGCGTCTTCACAAAAATTTG 490346 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || || ||||| |||| |||||| || | | ||| ||||||||| Sbjct 489642 AGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCT 489583 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || ||||| || || ||||| | ||||||||| || |||||| ||| ||| Sbjct 489582 TCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTCC 489523 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| || || | ||||| | || || || ||||| ||||| || Sbjct 489522 TGTATTTTCGACTTTACATTCTCAATTGTGTCCGATGACTCGACGTCCAAGGTGATGGTT 489463 Query 199598 TTACC 199602 || || Sbjct 489462 TTTCC 489458 >seq11 Length=2067354 Score = 87.8 bits (96), Expect = 4e-12 Identities = 148/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || |||||||| |||| |||||||||||||| | ||| |||| |||| ||| Sbjct 205874 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCCAACTG 205815 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||| | | || || | ||||||||| || |||||||| || | ||| || Sbjct 205814 CTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTCAAT-TT 205756 Query 199546 TTGCTTCACGGATTC-GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 ||| || | | | | | || || | || || ||||||| ||||| || || || | Sbjct 205755 TTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGG 205696 Query 199605 TGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 | | ||||| || || ||||| |||||| Sbjct 205695 TTAATGTTTTTACGAATATTTG---CATTTT 205668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178880091644116