Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5 131 7e-25 seq13 125 3e-23 seq9 118 4e-21 seq7 105 3e-17 seq11 91.5 6e-13 >seq5 Length=1370936 Score = 131 bits (144), Expect = 7e-25 Identities = 251/364 (69%), Gaps = 7/364 (2%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATAT 451302 || || ||||| || || |||||| || | ||| |||||||||| |||||| | | | Sbjct 542976 CCAGAGGAAATCTCCTCCATGGTT-TTGCAAAAGATGAAAGAAAATGCAGAAGCGTTTTT 542918 Query 451303 TGGTTC-TCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 || |||| | | ||||||| || || || || || ||||| |||||| | ||| Sbjct 542917 GGGAAAGTCCA-TCAAAAATGCAGTGATCACCGTGCCAGCCTATTTTAATGATTCCCAAA 542859 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | ||||| || || || ||||| ||||| ||||| ||||| | |||||||||| | Sbjct 542858 GACAAGCCACGAAGGACGCAGGTACCATTGCCGGTTTGAATGTCATGAGAATTATTAACG 542799 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 | || || ||||||||| | || ||||| || ||| || | || | |||||| | Sbjct 542798 AGCCAACCGCAGCTGCTATTGCGTATGGTCTTCATAAA---AAGGGAAAGGGAGAAAAGA 542742 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 | ||| | | || || | || |||||||| ||| || | || | ||||||| Sbjct 542741 ACATTCTCATTTTCGACCTCGGAGGAGGAACCTTCGATGTATCCCTCCTCACGATTGAAG 542682 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 |||| | || || || ||||| || ||| ||||| || | ||||| |||||| ||| Sbjct 542681 ATGGCATTTTCGAGGTGAAGGCCACAGCTGGAGATACCCACTTGGGAGGAGAAGATTTTG 542622 Query 451602 ATAA 451605 | || Sbjct 542621 ACAA 542618 >seq13 Length=2031768 Score = 125 bits (138), Expect = 3e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || || || || || ||||||||||| |||||||| Sbjct 489659 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 489718 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| |||||||| || ||||| || ||||| |||||||| Sbjct 489719 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 489778 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | ||||| | || |||||| | ||||||||||||||| | | ||||| || Sbjct 489779 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 489838 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || ||||| || Sbjct 489839 ATCCAGAAGGAATCCACCCTACACTTGGT 489867 Score = 125 bits (138), Expect = 3e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || || || || || ||||||||||| |||||||| Sbjct 489887 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 489946 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| |||||||| || ||||| || ||||| |||||||| Sbjct 489947 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 490006 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | ||||| | || |||||| | ||||| ||||||||| | ||||||| || Sbjct 490007 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 490066 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | || || ||||| || || Sbjct 490067 ATCCAGAAGGAATCCACCCTACACTTGGTCTT 490098 Score = 125 bits (138), Expect = 3e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || || || || || ||||||||||| |||||||| Sbjct 490115 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 490174 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| |||||||| || ||||| || ||||| |||||||| Sbjct 490175 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 490234 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | ||||| | || |||||| | ||||||||||||||| | | ||||| || Sbjct 490235 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 490294 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | || || ||||| || || Sbjct 490295 ATCCAGAAGGAATCCACCCTACACTTGGTCTT 490326 >seq9 Length=1923364 Score = 118 bits (130), Expect = 4e-21 Identities = 234/346 (68%), Gaps = 9/346 (3%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 |||||||||||||| || ||| | ||| | || ||| | || || || || Sbjct 1254329 AAAATGAAAGAAACGGCTGAAAACTATTTGGGAAGGAAAGTACACCAAGCTGTTATCACA 1254388 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || ||||| || |||||| | ||| ||||||| || |||||||||||| | ||||| Sbjct 1254389 GTGCCTGCTTACTTTAATGATTCGCAAAGGCAAGCTACCAAAGATGCAGGAAAAATTGCA 1254448 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 ||||| |||| |||||||||||||| || || || ||||| || |||||| ||| || Sbjct 1254449 GGTTTGGATGTCCTTCGAATTATTAACGAGCCAACCGCAGCGGCCTTAGCATTTGGGTTA 1254508 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | ||||| | || | || ||| || | |||||| || || || || Sbjct 1254509 G-------AAAAG--AGCGACGGGAAGGTCATTGCCGTGTATGATTTAGGAGGTGGTACC 1254559 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 ||| ||| | | |||| | || || |||||||| ||||| || ||||| Sbjct 1254560 TTTGACGTTTCCATTTTGGAAATTCTGGGAGGTGTTTTTGAAGTGAAGGCGACGAATGGA 1254619 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAAT 451619 |||| |||||||| |||||| | ||| | |||| | |||| Sbjct 1254620 AATACGTCCCTAGGAGGGGAAGATTTCGATCAGAGAATTTTAGAAT 1254665 >seq7 Length=1497819 Score = 105 bits (116), Expect = 3e-17 Identities = 187/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 451181 GTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA-ACTAAAACTTT 451239 || || ||| |||||||||| |||| |||| | || |||| || | | || || Sbjct 671272 GTGAACCAAGAAGGAAAGCCAAATATAAGAGTACAG-ATCAAGGACAAGAAGACGACGTT 671330 Query 451240 TGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATA 451299 ||| || ||| |||| | |||||| | ||||||||||||| ||| || | Sbjct 671331 TGCCCCAGAACAAATCAGTGCCATGGTTTTAGAGAAAATGAAAGAAATAGCTCAATCCTT 671390 Query 451300 TATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACA 451359 | | || ||||||| | ||||| | ||||| || || |||||||||||||| || Sbjct 671391 TTTGGGAAAGCCAGTTAAGAACGCAGTGGTAACTGTGCCAGCGTATTTCAATGATGCGCA 671450 Query 451360 ACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAA 451419 | |||||||| |||||||||||| |||||||| || || | | || ||||| || Sbjct 671451 GAGACAAGCAACAAAAGATGCAGGAACGATTGCTGGGTTGAACATCGTGCGTATTATAAA 671510 Query 451420 TGAACCTACAGCAGCTGCTCTAGCATATGG 451449 || || || ||||| ||| | || || || Sbjct 671511 CGAGCCAACCGCAGCAGCTTTGGCGTACGG 671540 >seq11 Length=2067354 Score = 91.5 bits (100), Expect = 6e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| |||||| | || || ||||| || || || ||||| || |||| Sbjct 205670 AATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCATC 205729 Query 391109 TGATAACATT-GAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 || | ||| | | | ||||| ||||||| |||||||||||||||| || ||||| | Sbjct 205730 CGAAACGATTAGGAACG-TTAAATCAAAAATTGAAGATAAGGAAGGAATCCCACCTGACC 205788 Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227 | || | |||| | ||||| || || | || |||| || | |||| || || | Sbjct 205789 AGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGACTACA 205848 Query 391228 ATATTGATAAGGATGCAACACTTCACTTAGTA 391259 | || | ||||| | || || ||||| ||| Sbjct 205849 ACATCCAGAAGGAGTCCACCCTGCACTTGGTA 205880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975648837424784