Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5 387 1e-101 seq7 188 5e-42 seq9 113 3e-19 >seq5 Length=1370936 Score = 387 bits (428), Expect = 1e-101 Identities = 1030/1549 (66%), Gaps = 46/1549 (3%) Strand=Plus/Plus Query 517196 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 517255 || |||||||| | ||| ||||| ||||||| || || || ||||| ||| Sbjct 541787 GACAATCTTCCCTTGTCATTCGTAATGGTAATATGATTCTGCTTTCCAGTGGATTTCTCA 541846 Query 517256 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 517315 | || || || ||||| |||||||||||||| | |||||| |||||||||||||| || Sbjct 541847 ACAGCGGTGACGTTAAGGATACCATTGGCATCAATATCAAAGGTGACTTCAATTTGGGGT 541906 Query 517316 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 517375 || || ||||||| ||||| || || | | |||| | |||| || || || Sbjct 541907 ACTTTCCTAGGAGCAGGGGGGATACCGTCTAGGTGAAATTTACCCAACAGGTTGTTGTCC 541966 Query 517376 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 517435 || || | || || || ||| | | |||||| || | | ||| ||||| | | Sbjct 541967 TTTGTTAGGGCTCTCTCTCCTTCGTACACTTGGATTAAGACACCTGGTTGGTTATCAGCA 542026 Query 517436 TAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATT 517494 || || ||||| | | ||| | || | | || || || |||||||| ||||| | || Sbjct 542027 TAGGTGGTAAAGATT-TGGCTCTTCTTCGCTGGGATGGTGGTGTTTCTCTCAATCAGCTT 542085 Query 517495 GGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 517554 |||||||| ||| ||||| ||||| ||||| || || |||| ||||| | |||| Sbjct 542086 GGTCATAACACCTCCTGCGGTTTCCAAACCGAGGGATAGAGAGCACACATCTAAGAGGAG 542145 Query 517555 AATATTTTGAA-GTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCA 517612 | || || | | || | | | |||| |||| ||| |||||||| | || ||| Sbjct 542146 TAAATCCTGCACGGCATTGGACTGATC-ACCAGACAA-AATGGCTGCTTGCACTGCTGCA 542203 Query 517613 CCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT--TTACCATTGAAAA 517670 ||||| || || ||||||||||| |||| | | | || || || |||||||||| Sbjct 542204 CCATACGCGACGGCTTCATCAGGGTTAATCGA--CCTGCAGGCTTCCTTTCCATTGAAAA 542261 Query 517671 AATTTGAAAGAAG---TTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 | | || || ||| || || ||||| | | || || || || | |||| Sbjct 542262 ACTCCTTAATGAGCGTTTGAATT---TTTGGAATTCTCGTGGAACCACCTACAAGGACAA 542318 Query 517728 TTTCATGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 517786 ||| ||||| || | || ||||| | | ||| ||||| || || || || Sbjct 542319 CTTCGTGCACGCTCTTCTT-ATCCATCATGGCATCTTTCAAAACCTTCTCCACAGGAATG 542377 Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 517846 || |||| || |||| ||| || || || ||| | ||||| | | || ||| Sbjct 542378 AGTGTGTCTCTGAAGTAGTCAATACATAGCTCCTCAAATCTGGCTCTGCTCACCGTCACA 542437 Query 517847 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 | || ||||| ||||| || | ||||||| ||| || || | ||| || ||||| || Sbjct 542438 CTGTAGTCAATACCTTCAAAAAGGGAATCAATTTCGATGGTGGCTTGGGTGGAAGAGGAC 542497 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT-- 517964 | | ||| || || | |||||| || ||||| |||| || ||| | ||| || Sbjct 542498 AAAGTACGCTTGGCTCTCTCACATTGGGTTCTTAGCCTTCTCAACGCTCT-GCTATTTTT 542556 Query 517965 -GATTCAAATCTGT---TTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 518020 ||| |||||| | | ||| ||||||||| |||||||||||||| | | || | Sbjct 542557 AGAT--AAATCTTTGCCTCTATTTTTTCTCTTAAAATCTTCAACACAAAAGTTGACCAAT 542614 Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 | || ||||||||||| |||||||| | |||| ||| | || || | || | |||| Sbjct 542615 CTGTTGTCAAAATCTTCTCCTCCCAAGTGGGTATCTCCAGCTGTGGCCTTCACCTCGAAA 542674 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | |||||||||| | | || | |||||| |||||| || || | || ||||| Sbjct 542675 ATGCCATCTTCAATCGTGAGGAGGGATACATCGAAGGTTCCTCCTCCGAGGTCGAAAATG 542734 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || | ||| ||||| | | ||||||| |||||||||||||| |||||| || ||| Sbjct 542735 AGAATGTTCTTTTCTCCCTTTCCCTTTTTATGAAGACCATACGCAATAGCAGCTGCGGTT 542794 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || ||||||||||||| ||||| | ||| ||||| | ||||| || || |||||| Sbjct 542795 GGCTCGTTAATAATTCTCATGACATTCAAACCGGCAATGGTACCTGCGTCCTTCGTGGCT 542854 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTTT 518319 |||||||| ||||| |||||||| || || || || || || |||| | | |||| Sbjct 542855 TGTCTTTGGGAATCATTAAAATAGGCTGGCACGGTGATCACTGCATTTTTGATGGACTTT 542914 Query 518320 ACCAATATAAGCGCT--TGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 518377 |||| || |||| ||| ||| |||||| || |||| ||| || || |||| Sbjct 542915 CCCAA---AAACGCTTCTGCATTTTCTTTCATCTTTTGCAAAACCATGGAGGAGATTTCC 542971 Query 518378 TCTGG--GGAAT-ATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA 518434 ||||| ||||| ||| ||| || ||| || || |||| || || | | Sbjct 542972 TCTGGGTGGAATAATTTCTT---CTCCCCTTGGTAGCTCACCTCAATCATGGGCTTCTCA 543028 Query 518435 CCAAC-----ATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGT 518489 |||| ||| | || |||| ||||||| |||||||| ||| || | Sbjct 543029 TCAACACCGGATT--TGACGGTAAAGGGCCAGTGCTTCATATCGCTTTGCACGGACGACT 543086 Query 518490 CATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG 518549 | | || | || || ||||| | || ||||| || | || || ||| || | | Sbjct 543087 CGGTGAACTTCCTTCCGATTAACCTCTTCGCATCGAAGACGGTGTTCTCTGGGTTCCTCG 543146 Query 518550 CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATG 518609 | |||| | || || |||||||| || || || || || || || | ||||| | Sbjct 543147 CCACTTGGTTCTTCGCAGCATCTCCTATTAGTCTCTCCGTGTCCGTGAAGGCCACATACG 543206 Query 518610 ATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATA 518669 |||| || || | || || || || || ||||| || || || || | ||| ||||| Sbjct 543207 ATGGGGTGGTTCTGTTTCCCTGGTCGTTGGCAATGATATCTACATTTTCGTTTCTCCATA 543266 Query 518670 CACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAATTTT 518718 | || || || | || ||||| | ||||| || || || || || Sbjct 543267 CGCCGACGCAGGAGTAGGTGGTTCCGAGGTCAATGCCGATTGCGATGTT 543315 >seq7 Length=1497819 Score = 188 bits (208), Expect = 5e-42 Identities = 468/703 (67%), Gaps = 13/703 (2%) Strand=Plus/Minus Query 517136 TTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCA 517195 || ||||| | ||| |||||| || || || |||||||| |||| ||||| || | Sbjct 672566 TTCTTATCCTCATCTGCAAATTTTTCTGCATCGTTAATCATTTTCTCGATTTGTTCCTTG 672507 Query 517196 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 517255 |||| |||||| || || ||||| |||||| ||| || |||| ||| || Sbjct 672506 GAGAGTCTTCCCTTATCGTTCGTAATGGTAATACCTTTGCTCTTTCCTGTTCCTTTGTCT 672447 Query 517256 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 517315 | || || | ||||| ||||| ||||| | ||| |||||||| |||| || Sbjct 672446 TCCGCTTCTACGTGGAGAATGCCATTCTTATCCACAGTAAAGGTGACTTCTATTTTGGGT 672387 Query 517316 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 517375 || |||||||| || |||||||| ||| | | |||| |||||| | | |||||| Sbjct 672386 ACTCCTCTCTGTGCTGGTGGGATTCCTGTGAGTTCAAATTTTCCCAAAAGGTGATTATCC 672327 Query 517376 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 517435 || || ||| || ||| || ||||| | ||| || || | | ||| |||||| Sbjct 672326 TTTGTTAATGCTCTTTCTCCTTCGAACACTTGAATGAGGACAGCTGGTTGGTTATCTTGG 672267 Query 517436 TAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATT 517494 || || | ||| |||| || || || || || ||||||||| | ||||| | Sbjct 672266 TAGGTGGAAAAGG-TCTGAGACTTCTTCGTTGGGATGACTGTGTTTCTTTTAATAAGTTG 672208 Query 517495 GGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 517554 ||||| ||||| || | ||||||| || | | || ||||| ||||| | ||| || Sbjct 672207 CGTCATGATACCTCCAACGGTTTCTATTCCTAACGTGAGTGGAGTCACATCTAGTAGAAC 672148 Query 517555 AATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614 | || ||| | || ||| || |||| | || | | ||||| || |||||||| Sbjct 672147 GACATCTTGTAATTCTTC-TC-------CCAAAATGATTC-CAGCTTGGATGGCAGCACC 672097 Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 517674 ||||| ||||||||||| || || | | | |||| ||| || ||||| || || | Sbjct 672096 GTATGCTACAGCTTCATCTGGGTTTATACCTCTATTTGGTTCCTTTCCATTAAAGAATTC 672037 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 | | || |||| | || || ||||||| |||||||| || | ||||| |||| Sbjct 672036 TTTTATAATTTGTTGAATTTTTGGGATACGAGTAGATCCTCCTACGAGAACAATCTCAT- 671978 Query 517735 CACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCG 517793 || | || | || || ||||| || || || || | |||||||| | | Sbjct 671977 CAATTTTGCTCTTCTCATATTTTGCGTCATCTAGTACCTTCTTTACGGGTTCTAAAGTTT 671918 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT 517836 ||||||| ||||| | | |||||| ||||| ||||| || Sbjct 671917 CTCTAAATAAGTCATCATTTAATTCTTCAAATTTGGCTCTCGT 671875 Score = 104 bits (114), Expect = 2e-16 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 518159 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 |||| || ||||| | ||| ||||| ||||| || || ||||| || || ||||| | | Sbjct 671558 TCTTCCTTCTTATCCAAACCGTACGCCAAAGCTGCTGCGGTTGGCTCGTTTATAATACGC 671499 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 | | || | |||||||| ||||||||||||| || |||||||| || | ||| || Sbjct 671498 ACGATGTTCAACCCAGCAATCGTTCCTGCATCTTTTGTTGCTTGTCTCTGCGCATCATTG 671439 Query 518279 AAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATATAAGCGCTT-- 518335 ||||| || || ||||| | || || | | ||| |||| |||| || | || Sbjct 671438 AAATACGCTGGCACAGTTACCACTGCGTTCTTAACTGGCTTTCCCAA---AAAGGATTGA 671382 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384 || ||| ||||||||| ||||| ||| | ||||||||||||| Sbjct 671381 GCTATTTCTTTCATTTTCTCTAAAACCATGGCACTGATTTGTTCTGGGG 671333 >seq9 Length=1923364 Score = 113 bits (124), Expect = 3e-19 Identities = 161/223 (72%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||| | || || || || || ||||| || |||||||||| | |||| | ||| ||| Sbjct 1254504 CCAAATGCTAAGGCCGCTGCGGTTGGCTCGTTAATAATTCGAAGGACATCCAAACCTGCA 1254445 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| ||||||||||||| || ||||| ||||| ||||| ||||| || ||||| || || Sbjct 1254444 ATTTTTCCTGCATCTTTGGTAGCTTGCCTTTGCGAATCATTAAAGTAAGCAGGCACTGTG 1254385 Query 518297 ATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGCTT---GCCGTTTGTTTCATTTT 518352 ||||| || | ||| ||| || |||| ||| | || ||||||| ||||||||| Sbjct 1254384 ATAACAGCTTGGTGTACTTTCCTTCCCAA-ATA---GTTTTCAGCCGTTTCTTTCATTTT 1254329 Query 518353 ACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTG 518395 |||| || | ||||| ||||||||||| |||| Sbjct 1254328 TTCCAAAACGCATGCTCCTATTTGACTTGGGGAATATTTCTTG 1254286 Score = 86.0 bits (94), Expect = 5e-11 Identities = 188/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 517268 TTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGA 517327 |||| ||| | || || |||| ||| || |||||||||||||||||||| ||||| | Sbjct 1255404 TTAATAATCGCGTTTGCGTCCACATCGAAGGTGACTTCAATTTGAGGGACTCCTCTAGGT 1255345 Query 517328 GCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTT 517387 ||||| || || || | |||| || | ||| | | |||||||| | | || | Sbjct 1255344 GCAGGGGGAATTCCCACTAAATCGAACGATCCTAACATTTTATTATCGCATGCCATTTCT 1255285 Query 517388 CGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT 517447 | ||| || | ||| | || ||| | || ||||| || || | | | || ||| Sbjct 1255284 CTTTCTCCTTGGAACACTTTGATGCTCACCTGTGTTTGGTTGTCAG-CTGCGGTGGAAAA 1255226 Query 517448 ACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACC 517506 |||| || || || || || || |||||||| | || | ||||| | || || Sbjct 1255225 GATCTGCGACTTCTTCGTCGGGATGGTCGTGTTTCTGTTGATCAATTTGGTGAAAACTCC 1255166 Query 517507 ACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 517545 |||| ||||||| ||| ||||| || ||| | ||||| Sbjct 1255165 ACCTAGGGTTTCTATACCTAGAGATAGGGGAATCACATC 1255127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780686035188088