Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5 367 2e-96 seq7 132 6e-26 seq9 113 6e-20 seq13 82.4 1e-10 >seq5 Length=1370936 Score = 367 bits (406), Expect = 2e-96 Identities = 1084/1653 (66%), Gaps = 26/1653 (2%) Strand=Plus/Plus Query 6509 TTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTT 6568 |||| | ||| ||||| |||||||| | ||| |||| || | |||| || || Sbjct 541670 TTCACTCCATAGCAGTAATTTTCGAGGCTATTTCTCGCTTCAATTCTTTTTTTGTTCTCC 541729 Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 |||||||| | || ||||| || || || | |||||| || || |||||| || Sbjct 541730 TCATCTTCCGCCTTGTACTTCTCAGCGTCGTTGACCATACGGTCGATTTCTTCTGGGGAC 541789 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTC 6687 ||||| ||||| ||||||||||| ||||| | ||| | ||| || | || || || | Sbjct 541790 AATCTTCCCTTGTCATTCGTAATGGTAATATGATTCTGCTTT-CCAGTGGATTTCTCAAC 541848 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||| | || || | |||||||| ||||||| ||| || | || | |||||| ||| Sbjct 541849 AGCGGTGACGTTAAGGATACCATTGGCATCAATATCAAAGGTGACTTCAATTTGGGGTAC 541908 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| || || | || ||||| || | |||| |||| | | |||| ||| | Sbjct 541909 TTTCCTAGGAGCAGGGGGGATACCGTCTAGGTGAAATTTACCCAACAGGTTGTTGTCCTT 541968 Query 6808 CGCCTT----CTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTT 6863 | || || | || ||||| || |||| ||| || | ||||| ||||| Sbjct 541969 TG--TTAGGGCTCTC--TCTCCTTCGTACACTTGGATTAAGACACCTGGTTGGTTATCAG 542024 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 || | |||||||| ||||| | ||| || || || |||||| ||| | | Sbjct 542025 CATAGGTGGTAAAGATTTGGCTCTTCTTCGCTGGGATGGTGGTGTTTCTCTCAATCAGCT 542084 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 |||||||| ||| || ||||| | || || || |||| ||| || ||||| | Sbjct 542085 TGGTCATAACACCTCCTGCGGTTTCCAAACCGAGGGATAGAGAGCACACATCTAAGAGGA 542144 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 | || || || | | | | ||||| | || ||||| ||||| || | || | Sbjct 542145 GTAAATCCTGCACGGCATTGGACTGATCACCAGACAAAATGGCTGCTTGCACTGCTGCAC 542204 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAG--TTCTTTACCGTTAAAATA 7101 | || ||||| || ||||| |||||||||| | ||| ||| || || || ||| | Sbjct 542205 CATACGCGACGGCTTCATCAGGGTTAATCGACCTG--CAGGCTTCCTTTCCATTGAAAAA 542262 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| | | ||||||||| || |||| || || ||||| || | || | ||| Sbjct 542263 CTCCTTAATGAGCGTTTGAATTTTTGGAATTCTCGTGGAACCACCTACAAGGACAACTTC 542322 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 | ||| || ||||| ||| | | ||| | || || ||||| | Sbjct 542323 GTGCACGCTCTTCTTATCCATCATGGCATCTTTCAAAACCTTCTCCACAGGAATGAGTGT 542382 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 | | ||| |||| ||||| || |||||||| | || | | | | | | | | Sbjct 542383 GTCTCTGAAGTAGTCAATACATAGCTCCTCAAATCTGGCTCTGCTCACCGTCACACTGTA 542442 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGT 7341 |||| || || | | ||||||||||| ||||| | ||| | | || || || || Sbjct 542443 GTCAATACCTTCAAAAAGGGAATCAATTTCGATGGTGGCTTGGGTGGAAGAGGACAAAGT 542502 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 ||||| || | |||||| |||| || | | | || | || || | Sbjct 542503 ACGCTTGGCTCTCTCACATTGGGTTCTTAGCCTTCTCAACGCTCTGCTATTTTTAGATAA 542562 Query 7402 ATCTTT--CT-TATGTTTACGTTTAAACTCTTCAG-AGAAGTGTCGAAGGAGTCTCGAAT 7457 |||||| || ||| ||| | ||||| |||||| | || || || | ||| | Sbjct 542563 ATCTTTGCCTCTATTTTTTCTCTTAAAATCTTCAACACAAAAGTTGACCAA-TCTGTTGT 542621 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 | |||||||| || |||||||| ||||| || || || || || || || || || || Sbjct 542622 CAAAATCTTCTCCTCCCAAGTGGGTATCTCCAGCTGTGGCCTTCACCTCGAAAATGCCAT 542681 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 ||||||| | | | || ||||| || || || || || ||||| |||||||| | || Sbjct 542682 CTTCAATCGTGAGGAGGGATACATCGAAGGTTCCTCCTCCGAGGTCGAAAATGAGAATGT 542741 Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 || | || | | | || |||| ||||| ||||| ||||| || || ||||| || | Sbjct 542742 TCTTTTCTCCCTTTCCCTTTTTATGAAGACCATACGCAATAGCAGCTGCGGTTGGCTCGT 542801 Query 7638 TAATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 ||||||| | | |||| |||| || ||||| || | || || ||||| ||||||| | Sbjct 542802 TAATAATTCTCATGACA-TTCAAACCGGCAATGGTACCTGCGTCCTTCGTGGCTTGTCTT 542860 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| ||||| ||||| || || || | || || | ||| ||| || | | Sbjct 542861 TGGGAATCATTAAAATAGGCTGGCACGGTGATCACTGCATTTTTGATGGACTTTCCCAAA 542920 Query 7757 TACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 ||| ||| || | |||||||| ||| | || |||||| || || || || || | Sbjct 542921 AACGCTTCTGCATTTTCTTTCATCTTTTGCAA-AACCATGGAGGAGATTTCCTCTGGGTG 542979 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 || |||| | || || | | || ||||||||||| || || || |||||| Sbjct 542980 GAATAATTTCTTCTCCCCTTGGTAGCTCACCTCAATCATGGGCTTCTCATCAACACCGGA 543039 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 | || || | | ||| | ||||||||| ||| || || | ||||| || Sbjct 543040 TTTGACGGTAAAGGGCCAGTGCTTCATATCGCTTTGCACGGACGACTCGGTGAACTTCCT 543099 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 |||||| | | ||| ||||| || || ||||| | |||||| | || ||||||||| Sbjct 543100 TCCGATTAACCTCTTCGCATCGAAGACGGTGTTCTCTGGGTTCCTCGCCACTTGGTTCTT 543159 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||| || || || || || | || | | |||| || || || ||||||||||| || Sbjct 543160 CGCAGCATCTCCTATTAGTCTCTCCGTGT---CCGTGAAGGCCACATACGATGGGGTGGT 543216 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||||||| ||||| || ||||| |||||| ||| ||||||||||| Sbjct 543217 TCTGTTTCCCTGGTCGTTGGCAATGATATCTACATTTTCGTTTCTCCATACGCCGACGCA 543276 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || || || ||||| | ||||| |||||||| Sbjct 543277 GGAGTAGGTGGTTCCGAGGTCAATGCCGATTGC 543309 >seq7 Length=1497819 Score = 132 bits (146), Expect = 6e-26 Identities = 412/630 (65%), Gaps = 17/630 (3%) Strand=Plus/Minus Query 6538 ATTCTTCGCCTCGACCTTTTTCGCGTACTTT-TCATCTTCATCTTTATACTTTTCCGCAT 6596 ||| ||||| ||||| |||||| | | || | ||| |||||| | | ||||| |||| Sbjct 672594 ATTTTTCGCTTCGAC-TTTTTCCCTAAGATTCTTATCCTCATCTGCAAATTTTTCTGCAT 672536 Query 6597 CTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAA 6656 | | | ||| || || || | ||| || || | ||| |||||||| |||||||| |||| Sbjct 672535 CGTTAATCATTTTCTCGATTTGTTCCTTGGAGAGTCTTCCCTTATCGTTCGTAATGGTAA 672476 Query 6657 TCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCAT 6716 | || | || || | | || ||||| || ||| | | ||| ||||| || Sbjct 672475 TACCTTTGCTCTTTCCTGTTCCTTTGTCTTCCGCTTCTACGTGGAGAATGCCATTCTTAT 672416 Query 6717 CAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTA 6776 | ||| || | || | |||| ||| || ||| |||| | ||| || || || | Sbjct 672415 CCACAGTAAAGGTGACTTCTATTTTGGGTACTCCTCTCTGTGCTGGTGGGATTCCTGTGA 672356 Query 6777 AATCAAATGTACCAAGTAAACTG-TTATCCGTCGCC--TTCTTACGTTCACCTTCATAGA 6833 |||||| | || | || || |||||| | | | || | ||| ||||| | | Sbjct 672355 GTTCAAATTTTCCCAA-AAGGTGATTATCCTTTGTTAATGCT--CTTTCTCCTTCGAACA 672299 Query 6834 CTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAG 6893 ||| ||| || || ||||| |||||||| || || ||| | || ||||| | Sbjct 672298 CTTGAATGAGGACAGCTGGTTGGTTATCTTGGTAGGTGGAAAAGGTCTGAGACTTCTTCG 672239 Query 6894 ATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTC 6953 ||| || || ||||| ||||| | ||||| ||||| || | ||||| | || Sbjct 672238 TTGGGATGACTGTGTTTCTTTTAATAAGTTGCGTCATGATACCTCCAACGGTTTCTATTC 672179 Query 6954 CAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCAC 7013 | | | || || ||||| || | || | | ||||| | |||| ||| | Sbjct 672178 CTAACGTGAGTGGAGTCACATCTAGTAGAACGACATCTTGTA---ATTC------TTCTC 672128 Query 7014 CCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCG 7073 || | ||| | ||||||| | || |||||||| || || ||||| ||||| || Sbjct 672127 CCAAAATGATTCCAGCTTGGATGGCAGCACCGTATGCTACAGCTTCATCTGGGTTTATAC 672068 Query 7074 TTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTC 7133 | |||| |||| || || ||||| | || || |||||||||||||| ||||| | Sbjct 672067 CTCTATTTGGTTCCTTTCCATTAAAGAATTCTTTTATAATTTGTTGAATTTTTGGGATAC 672008 Query 7134 GTGTCGATCCACCGACCAAAACGATTTCAT 7163 | || ||||| || || | ||| || |||| Sbjct 672007 GAGTAGATCCTCCTACGAGAACAATCTCAT 671978 Score = 129 bits (142), Expect = 7e-25 Identities = 224/326 (69%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||||||| |||| || || || || | || ||||| | ||| Sbjct 671684 TCGAAGTCCTCTCCTCCCAAGTGGGTATTTCCTGCAGTTGCGTAAACCTCAAACACACCA 671625 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| || | || ||||| || || || || || | || | | | | | Sbjct 671624 TTGTCGATGACTAGGATTGACACATCGAAGGTTCCTCCTCCTAAATCGTACACCAAAATG 671565 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 |||| || || | ||||||| | ||||||||| | ||| || || ||||| || Sbjct 671564 CTCGTCTCTTCCT------TCTTATCCAAACCGTACGCCAAAGCTGCTGCGGTTGGCTCG 671511 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || |||||||| | ||||| |||||||| ||| | |||||||| || ||||||| Sbjct 671510 TTTATAATACGCACGATGTTCAACCCAGCAATCGTTCCTGCATCTTTTGTTGCTTGTCTC 671451 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 |||| ||| || || || || || || ||||| || |||| | | ||| ||| || | | Sbjct 671450 TGCGCATCATTGAAATACGCTGGCACAGTTACCACTGCGTTCTTAACTGGCTTTCCCAAA 671391 Query 7757 TACGATTCCGCGATATCTTTCATTTT 7782 | |||| || || ||||||||||| Sbjct 671390 AAGGATTGAGCTATTTCTTTCATTTT 671365 >seq9 Length=1923364 Score = 113 bits (124), Expect = 6e-20 Identities = 229/335 (68%), Gaps = 10/335 (3%) Strand=Plus/Minus Query 7450 TCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAA 7509 |||| |||||||||||| || || | | |||| || ||||| || |||||||| Sbjct 1254655 TCTCTGATCGAAATCTTCCCCTCCTAGGGACGTATTTCCATTCGTCGCCTTCACTTCAAA 1254596 Query 7510 GATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 | |||||| ||| | || | ||||| ||||| |||||||| || | ||| | | Sbjct 1254595 AACACCTCCCAGAATTTCCAAAATGGAAACGTCAAAGGTACCACCTCCTAAATCATACAC 1254536 Query 7570 GAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 | | | | | ||||| |||| || | || | || | ||||| || || Sbjct 1254535 GGCAATGACCTTCCCGTCGC------TCTTTTCTAACCCAAATGCTAAGGCCGCTGCGGT 1254482 Query 7630 TGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 ||| || |||||||| ||||| ||| | || || ||||| || | |||||||| || | Sbjct 1254481 TGGCTCGTTAATAATTCGAAGGACA-TCCAAACCTGCAATTTTTCCTGCATCTTTGGTAG 1254423 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG-ACTTTC 7747 |||| | ||||||||| |||||||| || || || || | || || | ||| |||||| Sbjct 1254422 CTTGCCTTTGCGAATCATTAAAGTAAGCAGGCACTGTGATAACAGCTTG-GTGTACTTTC 1254364 Query 7748 TTACCGAGATACGATTCCGCGATATCTTTCATTTT 7782 | || | ||| ||| || | ||||||||||| Sbjct 1254363 CTTCCCAAATAGTTTTCAGCCGTTTCTTTCATTTT 1254329 >seq13 Length=2031768 Score = 82.4 bits (90), Expect = 1e-10 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 115731 TATATTTTCAAAAACTATACCATCAGAACCAGCaaaaaaaGCTAAAATATATTTTATAAA 115790 || |||||| ||||| || |||||| | ||||| || || || | | |||||| || Sbjct 1883160 TAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAGGCCAACACGTGTTTTATGAA 1883101 Query 115791 ATGTTTTTCATTATCACTTAATTCATTCCAATCATCCATATCTTTGGAAAAGTCTATCTC 115850 |||||||||||||||| |||||| | |||| | | ||| |||| ||||| || || Sbjct 1883100 ATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAATCGCTGGACAAGTCAATTTC 1883041 Query 115851 TTCAGCGGTCCAATTTGACATTTGGGCCTTTTTATACAAA 115890 || || ||||| ||| | |||||||| || ||| Sbjct 1883040 CTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTAAAAA 1883001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635110983188320