Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq13 143 3e-29 >seq13 Length=2031768 Score = 143 bits (158), Expect = 3e-29 Identities = 538/834 (65%), Gaps = 11/834 (1%) Strand=Plus/Minus Query 110374 CCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 ||||| || |||||||||||||| | || || | || || || |||||||| || | Sbjct 540332 CCCAAATTTTTCTGATTCGATTTAGCATTACAGGAGTCTTTGTACAGCATGTAGGGAACA 540273 Query 110434 CCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCG 110493 || ||||| |||| || |||||||| ||||| || || |||| ||| Sbjct 540272 CCCGTTTCTATCTGACTCTGCAGAATGGCAAACCATAGGTCCTGCGCAAGGACGGTTTTC 540213 Query 110494 TTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACA 110553 || | | | ||| ||||| || ||||| || || | || ||||||| ||| | Sbjct 540212 TTGCCCATATTTTCTTCCTCATATTTGGTATATAACTTTTCGAATTCCTCTCCCCATGAT 540153 Query 110554 TCAGAAAGACCCTTCGCCTTG--TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAA 110611 || | ||||| | || ||||| || | | | ||||||| | |||| | Sbjct 540152 TCGCTCA-ACCCTGGACATTCATTCGGG-CACATCAAAGTCCAATTTTTATTTTCCTTTA 540095 Query 110612 CCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCC 110670 | |||||||| || |||||||| | ||| | || |||| || || | || ||| Sbjct 540094 CTCTCTTCATAAATAGGTCAGGTACCCATACGGCGTAGAACAGATCCCTCGCTCTTAGC- 540036 Query 110671 TCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGT 110730 ||||| | || || || ||| || || ||||| || | || || |||||||| ||| Sbjct 540035 TCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAGTGCCACGGT 539976 Query 110731 TCGAGATAGACAGCGATGGATCCCTTACGACGACCCGCC---TGGTTAACATAGCGTGCT 110787 |||| || || |||| |||||| || | ||| || |||| ||||| | || Sbjct 539975 TCGATGTACACTGCGAAGGATCCTTTTCTCTTTCCCCCCCCTTGGTCTACATACCTAGCA 539916 Query 110788 GTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTA 110847 ||| |||| || ||||| ||||| || | | || | ||| || || || || || Sbjct 539915 GTGTCATTAAAAACCCTCAGCATTGGGACTAACCCGTTGGAAATGCCGTTAGTCCCTCTG 539856 Query 110848 ATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTA 110907 || || || | | | ||| || || | || ||||| ||||| ||| || Sbjct 539855 ATGTACGAATTTTGCCCCCTAATATCCTGCACGGCCACTCCAATCCCACCAGCCGTTTTG 539796 Query 110908 CTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTG 110967 ||||| ||||||| | || || || | || || ||||| || || | || || Sbjct 539795 CTAATCAACGCACACTGCTTTAGAGTCTCAAATATGCCTTCAATTGAGTCCGATTTCATG 539736 Query 110968 GCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGT 111027 | ||||| || ||||||||||| || | || || |||| |||||| | |||||| Sbjct 539735 CAGAGGAGAAAACAGGAAGACATCTGTGGCCTGGGTGTCCCCGAATTGAACAACGTAGGT 539676 Query 111028 GTCGCATGAATGAACAGAC-CTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTAC 111086 || || || |||| | || ||| |||||| | ||| || || ||||| || Sbjct 539675 GTTGCGTGGGTGAA-ATACTTTTGAGACATCAGATGGTACGTCTCTAGTGCCTTCTCTAG 539617 Query 111087 ATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAG 111146 |||| ||| || ||||| | |||| ||| | || || ||| || | || || | Sbjct 539616 ATCTCCTATGTGGATCCCAATAGATACTCTCATCAGCAAATGTTGCGGTCTCTCAATGAT 539557 Query 111147 CTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 ||| |||| || || | ||||| | | || | ||||| | |||||||| Sbjct 539556 CTTCCCATTAATTCGAAGGAGGTAGGACCTTTCCAATGTCTTAAACCCAAAGTA 539503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588955768674400