Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13 127 2e-24 >seq13 Length=2031768 Score = 127 bits (140), Expect = 2e-24 Identities = 575/896 (64%), Gaps = 30/896 (3%) Strand=Plus/Minus Query 47922 GTATATTGTATTATTTCAGCA-CATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980 ||||| | ||| ||||| ||| || || || | |||||| || || |||||||||| || Sbjct 540377 GTATACTCTATGATTTC-GCAGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTG 540319 Query 47981 ATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATC 48038 ||| ||| | |||| | ||| ||||| ||||| | || || ||||||||| Sbjct 540318 ATTCGATTTAGCAT--TACAGGAGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATC 540261 Query 48039 TGAGATTCAATGATAGATTTCCAAACA----GTCCTAGCCTTTATAACAGCT--CTAGCT 48092 ||| || || ||| | ||||| ||||| | | || | | || || Sbjct 540260 TGAC--TC--TGC-AGAATGGCAAACCATAGGTCCTGCGCA--AGGACGGTTTTCTTGCC 540208 Query 48093 T-TATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC--CCCATACACATTA 48149 |||| || | || ||||| ||||||||||| || ||||| || ||||| ||| Sbjct 540207 CATATTTTCTTCCTCATATTTGGTATATAACTTTTCGAATTCCTCTCCCCATG---ATTC 540151 Query 48150 TCT-AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCT 48208 || ||||| ||||||||||| || |||||||| | ||||| | || | |||||||| Sbjct 540150 GCTCAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTTATTTTCCTTTACTCT 540091 Query 48209 AGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTC 48268 ||||||||| || |||| ||| | || || | |||||| | |||||| ||||| Sbjct 540090 CTTCATAAATAGGTCAGGTACCCATACGGCGTAGAACAGATCCCTCGCTCTTAGCTCTTC 540031 Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 || || ||| | ||| || | ||| || | || || | ||||| ||||| | Sbjct 540030 CTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAGTGCCACGGTTCGAT 539971 Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388 || | ||| | ||| || || || ||||| |||| ||| || ||||| | Sbjct 539970 GTACACTGCGAAGGATCCTTTTCTCTTTCCCCCCCCTTGGTCTACATACCTAGCAGTGTC 539911 Query 48389 GTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTC--CCGAAATA 48446 ||| |||| || | ||||||||| | || || || || || || || | | || || Sbjct 539910 ATTAAAAACCCTCAGCATTGGGACTAACCCGTTGGAAATGCCGTTAGTCCCTCTGATGTA 539851 Query 48447 TAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGAT 48506 | || | | || |||| | | | || || ||||| ||| |||| Sbjct 539850 CGAATTTTGC--CCCCTAATATCCTGCACGGCCACTCCAATCCCACCAGCCGTTTTGCTA 539793 Query 48507 ATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTT 48566 || | |||||| | || || || ||| | || ||||| || || | |||| Sbjct 539792 ATCAACGCACACTGCTTTAGAGTCTCAAATATGCCTTCAATTGAGTCCGATTTCATGCAG 539733 Query 48567 AATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGAT 48626 | |||||||| |||||| || || || || ||||| || || || || | | Sbjct 539732 AGGAGAAAACAGGAAGACATCTGTGGCCTGGGTGTCCCCGAATTGAACAACGTAGGTGTT 539673 Query 48627 GCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC 48686 || || | || | || | || | || | || || || | | |||| ||| Sbjct 539672 GCGTGGGTGAAATACTTTTGAGACATCAGATGGTACGTCTCTAGTGCCTTCTCTAGATCT 539613 Query 48687 CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746 | | || || || |||||||| | ||| | || || ||| ||||| |||| || || Sbjct 539612 CCTATGTGGATCCCAATAGATACTCTCATCAGCAAATGTTGCGGTCTCTCAATGATCTTC 539553 Query 48747 TTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||| ||| | || || || |||||||||| ||||| ||||| |||| ||| Sbjct 539552 CCATTAATTCGAAGGAGGTAGGACCTTTCCAATGTCTTAAACCCAAAGTAGTCGTA 539497 Score = 122 bits (134), Expect = 1e-22 Identities = 251/371 (68%), Gaps = 2/371 (1%) Strand=Plus/Minus Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 ||| || |||||||| |||||| ||| || ||||| ||| || || | || | Sbjct 1883374 TATCATTTATCCATTTGGCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAA 1883315 Query 19193 TAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 | | | ||| |||| ||| | ||| | ||||| | || || ||||| || | Sbjct 1883314 TCGCGTGAAAGAGATTCATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGC 1883255 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 |||| | || ||||| ||||| |||| ||| || || || ||||||| |||| | Sbjct 1883254 TGTATGTCTCCGAATGGATATTCTCTACAGCAATTTGGAAGGCGTAAAATTTCTTTGCCT 1883195 Query 19313 CTGTTATCTGTACTTCACTACAAAATCTT-TCGACCAAATTTTCATTAACTATTCCATCA 19371 | ||||| | |||| | ||||| | ||| | | |||||| ||| ||||||||| Sbjct 1883194 CGGTTATTTTCACTTGGCGTAAAAATTTGCTCG-CTAGATTTTCCAAAACAATTCCATCA 1883136 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA 19431 || |||||||| || || || || ||||| || ||||||||||||| ||||| | Sbjct 1883135 CTGGCTGCAAAGAAGGCCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTT 1883076 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 | |||| || | ||| | || || || | ||| || | ||||| || || ||||| Sbjct 1883075 TCGAAATCTTTTAAATCGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCC 1883016 Query 19492 GCTTTTTTATA 19502 || ||||| || Sbjct 1883015 GCCTTTTTGTA 1883005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562089491562720