Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5 237 1e-56 seq7 149 5e-30 seq13 118 9e-21 >seq5 Length=1370936 Score = 237 bits (262), Expect = 1e-56 Identities = 555/829 (67%), Gaps = 29/829 (3%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGA 551848 ||||||| | || | || || ||||||||||| || ||| |||| | |||||||| Sbjct 542653 TGGAGATACCCACTTGGGAGGAGAAGATTTTGACAACAGATTGGTCAACTTTTGTGTTGA 542594 Query 551849 AGATTTTAAACGAAAAAACAAAG---TTGATCTATCTACATCTGCCAAAGCTCTTCGTCG 551905 ||||||||| ||||||| | || ||| |||||| | | || ||| | | | Sbjct 542593 AGATTTTAAGAGAAAAAATAGAGGCAAAGATTTATCTAAAAATAGCAGAGCGTTGAGAAG 542534 Query 551906 TCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTAT 551965 |||||||| || || |||||||| || || | || ||| || ||| |||| || Sbjct 542533 GCTAAGAACCCAATGTGAGAGAGCCAAGCGTACTTTGTCCTCTTCCACCCAAGCCACCAT 542474 Query 551966 TGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATT 552025 ||| | ||||| | ||||| || ||||| || | | | | | || |||| ||| Sbjct 542473 CGAAATTGATTCCCTTTTTGAAGGTATTGACTACAGTGTGACGGTGAGCAGAGCCAGATT 542414 Query 552026 TGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAG 552085 ||| || | ||| ||| ||| ||| | ||| | || || || | ||||| | Sbjct 542413 TGAGGAGCTATGTATTGACTACTTCAGAGACACACTCATTCCTGTGGAGAAGGTTTTGAA 542354 Query 552086 AGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAG 552145 |||| | | ||| ||||| | || || ||| |||| ||||| ||||| || || || Sbjct 542353 AGATGCCATGATGGATAAGAAGAGCGTGCACGAAGTTGTCCTTGTAGGTGGTTCCACGAG 542294 Query 552146 AATTCCTAAAATTCGCGAAATG----TTAAGTTCTTATTTCAATGGTAAAAAATTAAATG 552201 |||||| ||||||| ||| | ||||| || ||||||||| || || || Sbjct 542293 AATTCCAAAAATTC---AAACGCTCATTAAGGAGTT-TTTCAATGGAAAGGAA--GCCTG 542240 Query 552202 AAAGT--GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | || |||| || ||||| || || || |||||||| ||| | |||||||| ||| | Sbjct 542239 CAGGTCGATTAACCCTGATGAAGCCGTCGCGTATGGTGCAGCAGTGCAAGCAGCCATTTT 542180 Query 552260 TTCTGGACAAACTGATGA----AAAAC--TACAAAATATTGTACTTGTAGATGT-TACTC 552312 ||||| |||| | || | | || || | | || ||||||| | || Sbjct 542179 GTCTGG------TGATCAGTCCAATGCCGTGCAGGATTTACTCCTCTTAGATGTGTGCT- 542127 Query 552313 CTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATA 552372 ||||||| || ||||| ||||| | |||||| ||||||| || || || || ||||| | Sbjct 542126 CTCTATCCCTCGGTTTGGAAACCGCAGGAGGTGTTATGACCAAGCTGATTGAGAGAAACA 542067 Query 552373 CTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTG 552432 | || || || || || | | ||| | || ||| | ||||| ||| | | || Sbjct 542066 CCACCATCCCAGCGAAGAAGAGCCAAATCTTTACCACCTATGCTGATAACCAACCAGGTG 542007 Query 552433 TTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTA 552492 | ||| ||| | | |||||||| ||| | || || || || || | | |||| Sbjct 542006 TCTTAATCCAAGTGTACGAAGGAGAGAGAGCCCTAACAAAGGACAACAACCTGTTGGGTA 541947 Query 552493 CTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTT 552552 ||| | |||| ||||| || ||||||||| | |||||| ||||||||||| || | Sbjct 541946 AATTTCACCTAGACGGTATCCCCCCTGCTCCTAGGAAAGTACCCCAAATTGAAGTCACCT 541887 Query 552553 TCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 | ||||| ||||||||||| || | || || || ||| ||| ||||| Sbjct 541886 TTGATATTGATGCCAATGGTATCCTTAACGTCACCGCTGTTGAGAAATC 541838 >seq7 Length=1497819 Score = 149 bits (164), Expect = 5e-30 Identities = 359/542 (66%), Gaps = 11/542 (2%) Strand=Plus/Plus Query 552013 CGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAG 552072 |||| |||||||||||||| | | ||| | |||||| |||| | ||||| ||| Sbjct 671876 CGAGAGCCAAATTTGAAGAATTAAATGATGACTTATTTAGAGAAACTTTAGAACCCGTA- 671934 Query 552073 AACAAGTTTTAAGA-GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTT 552131 || ||| | ||| || |||| ||| || |||| | |||| ||||| || || Sbjct 671935 AAGAAGGTACTAGATGACGCAAAATATGAGAAGAGCAAAATTGATGAGATTGTTCTCGTA 671994 Query 552132 GGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAA 552191 || |||||||| | || || ||||||| |||| ||| | || ||||| || Sbjct 671995 GGAGGATCTACTCGTATCCCAAAAATTCAACAAATTATAAAAGAATTCTTTAATGGAAAG 672054 Query 552192 AAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCA 552251 || |||| | || | || |||||||| ||||| || || ||||| || || ||||| Sbjct 672055 GAACCAAATAGAGGTATAAACCCAGATGAAGCTGTAGCATACGGTGCTGCCATCCAAGCT 672114 Query 552252 GCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACT 552311 | || ||| ||| ||| || ||||| || | || || ||||||| ||| Sbjct 672115 GGAATCATTTTGGGA---------GAAGAATTACAAGATGTCGTTCTACTAGATGTGACT 672165 Query 552312 CCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAAT 552371 || || | | || ||||||| ||||||||||| ||||| | ||||| | ||||| Sbjct 672166 CCACTCACGTTAGGAATAGAAACCGTTGGAGGTATCATGACGCAACTTATTAAAAGAAAC 672225 Query 552372 ACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCT 552431 || || || || || |||| ||||| || || |||||| ||| | ||| Sbjct 672226 ACAGTCATCCCAACGAAGAAGTCTCAGACCTTTTCCACCTACCAAGATAACCAACCAGCT 672285 Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491 || |||||| | || |||||||||||| ||| || || |||||| | | | || Sbjct 672286 GTCCTCATTCAAGTGTTCGAAGGAGAAAGAGCATTAACAAAGGATAATCACCTTTTGGGA 672345 Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551 | ||| | | ||| || || || || | | |||||||| |||| ||||| || Sbjct 672346 AAATTTGAACTCACAGGAATCCCACCAGCACAGAGAGGAGTACCCAAAATAGAAGTCACC 672405 Query 552552 TT 552553 || Sbjct 672406 TT 672407 Score = 134 bits (148), Expect = 1e-25 Identities = 364/548 (66%), Gaps = 12/548 (2%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || || ||||| || ||||| || || ||||| |||| ||||||| | ||| Sbjct 671008 ATCGGAATCGACTTAGGCACAACATACAGCTGCGTTGGAGTTTTCAAAAATGGCAGAGTG 671067 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||| | ||| || | || ||| | | || || || ||||| || ||| ||| Sbjct 671068 GAAATTTTGAACAACGAGCTGGGAAACCGTATCACCCCCTCGTATGTATCCTTCGTGGAT 671127 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||| || ||||| ||||| |||| ||||||| | || || | || Sbjct 671128 GGAGAAAGGAAGGTGGGTGAGGCAGCCAAATTGGAAGCCACCCTACACCCCACGCAGACA 671187 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCG--ACTGTTCAGGCAG 550232 | || |||| ||||| || || ||||||| ||| | || | | || | || || Sbjct 671188 GTATTCGATGTGAAACGATTGATAGGAAGAAAATTTGACGACCAGGAAGTGGTGAG--AG 671245 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTA 550292 ||| || | || ||| | | ||||||| || ||||| || |||| || || Sbjct 671246 ATAGGACCCTTTTGCCATACGAAATTGTGAACCAAGAAGGAAAGCCAAATATAAGAG-TA 671304 Query 550293 CTCATGAAGGATCTGTTAAACAA--TTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | || ||||| | | || | ||| | ||||||||||| | ||||||||| Sbjct 671305 CAGATCAAGGACAAGA-AGACGACGTTTGCCCCAGAACAAATCAGTGCCATGGTTTTAGA 671363 Query 550351 GAAAATGAAACAAACAGC-CAGTGCTTTTGTTGGTCAAG-AAGTTACGGATGCAGTAATA 550408 |||||||||| ||| ||| || | |||| |||| ||| ||||| | | ||||| || Sbjct 671364 GAAAATGAAAGAAATAGCTCAATCCTTT--TTGGGAAAGCCAGTTAAGAACGCAGTGGTA 671421 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| ||||| ||||| ||||| | || | ||||| || |||||||| ||| ||| Sbjct 671422 ACTGTGCCAGCGTATTTCAATGATGCGCAGAGACAAGCAACAAAAGATGCAGGAACGATT 671481 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | || | | |||||||| || || || || || || || | || || || Sbjct 671482 GCTGGGTTGAACATCGTGCGTATTATAAACGAGCCAACCGCAGCAGCTTTGGCGTACGGT 671541 Query 550529 CTTGATAA 550536 | ||||| Sbjct 671542 TTGGATAA 671549 >seq13 Length=2031768 Score = 118 bits (130), Expect = 9e-21 Identities = 138/184 (75%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || |||||||| | ||||||||| |||||| | ||||||||| |||||||| ||||| Sbjct 489840 ATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTC 489781 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||||||||| ||||| || || || || |||||||| ||| || || || ||| Sbjct 489780 TGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTA 489721 Query 563413 TCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | || |||| || ||||| | || || || || || || || || |||||||| Sbjct 489720 TCGGATGATTCTACA-TCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTG 489662 Query 563472 CATA 563475 |||| Sbjct 489661 CATA 489658 Score = 118 bits (130), Expect = 9e-21 Identities = 138/184 (75%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || |||||||| | ||||||||| |||||| | ||||||||| |||||||| ||||| Sbjct 490296 ATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTC 490237 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||||||||| ||||| || || || || |||||||| ||| || || || ||| Sbjct 490236 TGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTA 490177 Query 563413 TCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | || |||| || ||||| | || || || || || || || || |||||||| Sbjct 490176 TCGGATGATTCTACA-TCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTG 490118 Query 563472 CATA 563475 |||| Sbjct 490117 CATA 490114 Score = 113 bits (124), Expect = 4e-19 Identities = 137/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || |||||||| | ||||||||| ||||| | ||||||||| |||||||| ||||| Sbjct 490068 ATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTC 490009 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||||||||| ||||| || || || || |||||||| ||| || || || ||| Sbjct 490008 TGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTA 489949 Query 563413 TCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | || |||| || ||||| | || || || || || || || || |||||||| Sbjct 489948 TCGGATGATTCTACA-TCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTG 489890 Query 563472 CATA 563475 |||| Sbjct 489889 CATA 489886 Score = 111 bits (122), Expect = 1e-18 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| ||||| | || | ||| ||| || || ||||| || | ||| ||| Sbjct 490563 CTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTT 490504 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 ||| ||||| | |||||| |||||||| || ||||| |||||||| || |||||||| Sbjct 490503 CTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCC 490444 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAG 563432 |||||||| || ||||| ||| || ||||| || || | ||| | || || || Sbjct 490443 TCTTTATCCTGTATTTTGGCTTTCACATTTTCAATCGTGTCGGA-TGACTCCACATCAAG 490385 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | || || || ||||| || || || |||||||||||| Sbjct 490384 GGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCATA 490342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029150673366520