Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[refseq_20GCF_5F000002415.2_202009-05-06] 2,748 sequences; 27,013,691 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq13 187 5e-42 >seq13 Length=2031768 Score = 187 bits (206), Expect = 5e-42 Identities = 610/943 (65%), Gaps = 20/943 (2%) Strand=Plus/Minus Query 212711 CTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTC 212770 |||||| ||||| | | ||| ||| || ||||| || ||||| | |||| || ||| Sbjct 541188 CTGGTCGATGAAGGCGCCCCGGTCGGCCGCCATATCGATGATGTTCTTCTGCTTGATCTC 541129 Query 212771 CCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGA 212830 ||| |||||||| ||| || || | ||| | || | || |||| || ||| Sbjct 541128 CCAGACGGTCTTATAGAGCTCCTTCAAGTCGGCGGGAATTTCGCTAATGTATTGGACACT 541069 Query 212831 CCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCC-A 212889 ||| |||| | | |||||| | ||||||||| | ||||||||| | |||| | Sbjct 541068 CCCGTTGTGCGCGATGAGCTGCTGCTTCATGTCCTCATCCCAGAGGCCGC-GGTCGAAGA 541010 Query 212890 GGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGT 212949 || ||| | |||||| ||||| || | ||| || || ||| |||| ||| | || Sbjct 541009 GGTCCTTCAGCAGGTGGGGGTTCACCACGAAGAACTCTCCACTGAGGACCCGCCTGTAGT 540950 Query 212950 AAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGG 213009 ||| || ||||| ||||| | ||||||||||||||||| || | ||| | Sbjct 540949 AAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGATG 540890 Query 213010 CTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCC 213069 | || |||||||| || | || || ||||||| ||||||| || | Sbjct 540889 CAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGCCT 540830 Query 213070 GAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAA 213129 || || |||||||||| | || | || |||| || ||||||||||||| Sbjct 540829 TCAGTTCATCCCAGTCCCA------ATACTTCTTATCTACCTTAACATTCCACATGTCAA 540776 Query 213130 ACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCT 213189 |||| | ||| |||| ||| | || || |||||||| | || || |||| | || Sbjct 540775 ACTGAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGCT 540716 Query 213190 TGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGT 213249 ||||||||| |||| | || ||| | || || ||||| || || || ||| Sbjct 540715 GGGCCAGCTCCATGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGT 540656 Query 213250 TGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCA 213309 | |||| || || || | |||| | ||| | ||| || |||| Sbjct 540655 TTAGCTCTTTAGCAGAATCAGATTCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGCCA 540596 Query 213310 GCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCT 213366 ||||||| || || ||||| ||||||||||||||| ||| || ||||| ||||| Sbjct 540595 GCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGG---CCTCCT 540539 Query 213367 CCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA 213426 ||| |||||| | || | || || || | || | |||||||| | |||||| | Sbjct 540538 CCACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAA 540479 Query 213427 CATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGG 213486 | | || | || || || | | | | | || || | ||| | Sbjct 540478 TTTCGTAGAGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCG 540419 Query 213487 CGATGCTGGCCAGGTTGCAAACGGCCACCTCCT---GAGAGTCTGTGTACTCCATGATCT 213543 ||||| ||||| |||||| |||||||| || | ||||| || ||||| ||||| | Sbjct 540418 CGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAG---GTATACTCTATGATTT 540362 Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603 || ||| |||||||| ||| |||||||||| || | || || || || || || Sbjct 540361 CGCAGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTAC 540302 Query 213604 CAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 || || ||||| ||||||||||| || || |||| ||| Sbjct 540301 AGGAGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTG 540259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931500801848320